211 related articles for article (PubMed ID: 26847109)
1. sciReptor: analysis of single-cell level immunoglobulin repertoires.
Imkeller K; Arndt PF; Wardemann H; Busse CE
BMC Bioinformatics; 2016 Feb; 17():67. PubMed ID: 26847109
[TBL] [Abstract][Full Text] [Related]
2. IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS.
Alamyar E; Duroux P; Lefranc MP; Giudicelli V
Methods Mol Biol; 2012; 882():569-604. PubMed ID: 22665256
[TBL] [Abstract][Full Text] [Related]
3. ImmunoDataAnalyzer: a bioinformatics pipeline for processing barcoded and UMI tagged immunological NGS data.
Vetter J; Schaller S; Heinzel A; Aschauer C; Reindl-Schwaighofer R; Jelencsics K; Hu K; Oberbauer R; Winkler SM
BMC Bioinformatics; 2022 Jan; 23(1):21. PubMed ID: 34991455
[TBL] [Abstract][Full Text] [Related]
4. SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysis.
Ye H; Cheng L; Ju B; Xu G; Liu Y; Zhang S; Wang L; Zhang Z
Gigascience; 2021 Sep; 10(9):. PubMed ID: 34585238
[TBL] [Abstract][Full Text] [Related]
5. ASAP - A Webserver for Immunoglobulin-Sequencing Analysis Pipeline.
Avram O; Vaisman-Mentesh A; Yehezkel D; Ashkenazy H; Pupko T; Wine Y
Front Immunol; 2018; 9():1686. PubMed ID: 30105017
[TBL] [Abstract][Full Text] [Related]
6. Advanced Methodologies in High-Throughput Sequencing of Immune Repertoires.
Friedensohn S; Khan TA; Reddy ST
Trends Biotechnol; 2017 Mar; 35(3):203-214. PubMed ID: 28341036
[TBL] [Abstract][Full Text] [Related]
7. Novel Approaches to Analyze Immunoglobulin Repertoires.
Wardemann H; Busse CE
Trends Immunol; 2017 Jul; 38(7):471-482. PubMed ID: 28566130
[TBL] [Abstract][Full Text] [Related]
8. IMGT/HighV-QUEST Statistical Significance of IMGT Clonotype (AA) Diversity per Gene for Standardized Comparisons of Next Generation Sequencing Immunoprofiles of Immunoglobulins and T Cell Receptors.
Aouinti S; Malouche D; Giudicelli V; Kossida S; Lefranc MP
PLoS One; 2015; 10(11):e0142353. PubMed ID: 26540440
[TBL] [Abstract][Full Text] [Related]
9. LymAnalyzer: a tool for comprehensive analysis of next generation sequencing data of T cell receptors and immunoglobulins.
Yu Y; Ceredig R; Seoighe C
Nucleic Acids Res; 2016 Feb; 44(4):e31. PubMed ID: 26446988
[TBL] [Abstract][Full Text] [Related]
10. TRIg: a robust alignment pipeline for non-regular T-cell receptor and immunoglobulin sequences.
Hung SJ; Chen YL; Chu CH; Lee CC; Chen WL; Lin YL; Lin MC; Ho CL; Liu T
BMC Bioinformatics; 2016 Oct; 17(1):433. PubMed ID: 27782801
[TBL] [Abstract][Full Text] [Related]
11. The methods and advances of adaptive immune receptors repertoire sequencing.
Liu H; Pan W; Tang C; Tang Y; Wu H; Yoshimura A; Deng Y; He N; Li S
Theranostics; 2021; 11(18):8945-8963. PubMed ID: 34522220
[TBL] [Abstract][Full Text] [Related]
12. ImmunExplorer (IMEX): a software framework for diversity and clonality analyses of immunoglobulins and T cell receptors on the basis of IMGT/HighV-QUEST preprocessed NGS data.
Schaller S; Weinberger J; Jimenez-Heredia R; Danzer M; Oberbauer R; Gabriel C; Winkler SM
BMC Bioinformatics; 2015 Aug; 16():252. PubMed ID: 26264428
[TBL] [Abstract][Full Text] [Related]
13. Practical guidelines for B-cell receptor repertoire sequencing analysis.
Yaari G; Kleinstein SH
Genome Med; 2015 Nov; 7():121. PubMed ID: 26589402
[TBL] [Abstract][Full Text] [Related]
14. Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.
Gadala-Maria D; Yaari G; Uduman M; Kleinstein SH
Proc Natl Acad Sci U S A; 2015 Feb; 112(8):E862-70. PubMed ID: 25675496
[TBL] [Abstract][Full Text] [Related]
15. Single-cell based high-throughput sequencing of full-length immunoglobulin heavy and light chain genes.
Busse CE; Czogiel I; Braun P; Arndt PF; Wardemann H
Eur J Immunol; 2014 Feb; 44(2):597-603. PubMed ID: 24114719
[TBL] [Abstract][Full Text] [Related]
16. PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data.
Anslan S; Bahram M; Hiiesalu I; Tedersoo L
Mol Ecol Resour; 2017 Nov; 17(6):e234-e240. PubMed ID: 28544559
[TBL] [Abstract][Full Text] [Related]
17. High-Quality Library Preparation for NGS-Based Immunoglobulin Germline Gene Inference and Repertoire Expression Analysis.
Vázquez Bernat N; Corcoran M; Hardt U; Kaduk M; Phad GE; Martin M; Karlsson Hedestam GB
Front Immunol; 2019; 10():660. PubMed ID: 31024532
[TBL] [Abstract][Full Text] [Related]
18. pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.
Vander Heiden JA; Yaari G; Uduman M; Stern JN; O'Connor KC; Hafler DA; Vigneault F; Kleinstein SH
Bioinformatics; 2014 Jul; 30(13):1930-2. PubMed ID: 24618469
[TBL] [Abstract][Full Text] [Related]
19. Analyzing Immunoglobulin Repertoires.
Chaudhary N; Wesemann DR
Front Immunol; 2018; 9():462. PubMed ID: 29593723
[TBL] [Abstract][Full Text] [Related]
20. AncesTree: An interactive immunoglobulin lineage tree visualizer.
Foglierini M; Pappas L; Lanzavecchia A; Corti D; Perez L
PLoS Comput Biol; 2020 Jul; 16(7):e1007731. PubMed ID: 32649725
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
