375 related articles for article (PubMed ID: 26861018)
21. Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.
White RA; Bottos EM; Roy Chowdhury T; Zucker JD; Brislawn CJ; Nicora CD; Fansler SJ; Glaesemann KR; Glass K; Jansson JK
mSystems; 2016; 1(3):. PubMed ID: 27822530
[TBL] [Abstract][Full Text] [Related]
22. A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics.
Eisenhofer R; Nesme J; Santos-Bay L; Koziol A; Sørensen SJ; Alberdi A; Aizpurua O
Microbiol Spectr; 2024 Apr; 12(4):e0359023. PubMed ID: 38451230
[TBL] [Abstract][Full Text] [Related]
23. Assembly methods for nanopore-based metagenomic sequencing: a comparative study.
Latorre-Pérez A; Villalba-Bermell P; Pascual J; Vilanova C
Sci Rep; 2020 Aug; 10(1):13588. PubMed ID: 32788623
[TBL] [Abstract][Full Text] [Related]
24. Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists.
Jo J; Oh J; Park C
J Microbiol; 2020 Mar; 58(3):176-192. PubMed ID: 32108314
[TBL] [Abstract][Full Text] [Related]
25. Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome.
Uritskiy G; DiRuggiero J
Genes (Basel); 2019 Mar; 10(3):. PubMed ID: 30875864
[TBL] [Abstract][Full Text] [Related]
26. LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome.
Yang C; Zhang Z; Huang Y; Xie X; Liao H; Xiao J; Veldsman WP; Yin K; Fang X; Zhang L
Gigascience; 2024 Jan; 13():. PubMed ID: 38869148
[TBL] [Abstract][Full Text] [Related]
27. Metagenomic Assembly: Reconstructing Genomes from Metagenomes.
Wang Z; Liang JL; Huang LN; Mengoni A; Shu WS
Methods Mol Biol; 2021; 2242():139-152. PubMed ID: 33961222
[TBL] [Abstract][Full Text] [Related]
28. Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota.
Foutel-Rodier T; Thierry A; Koszul R; Marbouty M
Methods Enzymol; 2018; 612():183-195. PubMed ID: 30502941
[TBL] [Abstract][Full Text] [Related]
29. Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method.
Maranga M; Szczerbiak P; Bezshapkin V; Gligorijevic V; Chandler C; Bonneau R; Xavier RJ; Vatanen T; Kosciolek T
mSystems; 2023 Apr; 8(2):e0117822. PubMed ID: 37010293
[TBL] [Abstract][Full Text] [Related]
30. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing.
Rawat A; Engelthaler DM; Driebe EM; Keim P; Foster JT
PLoS One; 2014; 9(11):e110915. PubMed ID: 25365329
[TBL] [Abstract][Full Text] [Related]
31. Ultra-deep, long-read nanopore sequencing of mock microbial community standards.
Nicholls SM; Quick JC; Tang S; Loman NJ
Gigascience; 2019 May; 8(5):. PubMed ID: 31089679
[TBL] [Abstract][Full Text] [Related]
32. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
[TBL] [Abstract][Full Text] [Related]
33. Taxonomic binning of metagenome samples generated by next-generation sequencing technologies.
Dröge J; McHardy AC
Brief Bioinform; 2012 Nov; 13(6):646-55. PubMed ID: 22851513
[TBL] [Abstract][Full Text] [Related]
34. Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes.
Treiber ML; Taft DH; Korf I; Mills DA; Lemay DG
BMC Bioinformatics; 2020 Feb; 21(1):74. PubMed ID: 32093654
[TBL] [Abstract][Full Text] [Related]
35. Practical evaluation of 11 de novo assemblers in metagenome assembly.
Forouzan E; Shariati P; Mousavi Maleki MS; Karkhane AA; Yakhchali B
J Microbiol Methods; 2018 Aug; 151():99-105. PubMed ID: 29953874
[TBL] [Abstract][Full Text] [Related]
36. Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.
Yorki S; Shea T; Cuomo CA; Walker BJ; LaRocque RC; Manson AL; Earl AM; Worby CJ
Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36804804
[TBL] [Abstract][Full Text] [Related]
37. Benchmarking second and third-generation sequencing platforms for microbial metagenomics.
Meslier V; Quinquis B; Da Silva K; Plaza Oñate F; Pons N; Roume H; Podar M; Almeida M
Sci Data; 2022 Nov; 9(1):694. PubMed ID: 36369227
[TBL] [Abstract][Full Text] [Related]
38. Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data.
Arumugam K; Bağcı C; Bessarab I; Beier S; Buchfink B; Górska A; Qiu G; Huson DH; Williams RBH
Microbiome; 2019 Apr; 7(1):61. PubMed ID: 30992083
[TBL] [Abstract][Full Text] [Related]
39. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
[TBL] [Abstract][Full Text] [Related]
40. Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples.
Zaragoza-Solas A; Haro-Moreno JM; Rodriguez-Valera F; López-Pérez M
mSystems; 2022 Jun; 7(3):e0019222. PubMed ID: 35695508
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
