BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

185 related articles for article (PubMed ID: 26904016)

  • 1. Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies.
    Mende DR; Aylward FO; Eppley JM; Nielsen TN; DeLong EF
    Front Microbiol; 2016; 7():143. PubMed ID: 26904016
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
    García-López R; Vázquez-Castellanos JF; Moya A
    Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton.
    Labonté JM; Swan BK; Poulos B; Luo H; Koren S; Hallam SJ; Sullivan MB; Woyke T; Wommack KE; Stepanauskas R
    ISME J; 2015 Nov; 9(11):2386-99. PubMed ID: 25848873
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
    Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
    BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
    Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
    Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.
    White RA; Bottos EM; Roy Chowdhury T; Zucker JD; Brislawn CJ; Nicora CD; Fansler SJ; Glaesemann KR; Glass K; Jansson JK
    mSystems; 2016; 1(3):. PubMed ID: 27822530
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.
    Chitsaz H; Yee-Greenbaum JL; Tesler G; Lombardo MJ; Dupont CL; Badger JH; Novotny M; Rusch DB; Fraser LJ; Gormley NA; Schulz-Trieglaff O; Smith GP; Evers DJ; Pevzner PA; Lasken RS
    Nat Biotechnol; 2011 Sep; 29(10):915-21. PubMed ID: 21926975
    [TBL] [Abstract][Full Text] [Related]  

  • 8. VirSorter: mining viral signal from microbial genomic data.
    Roux S; Enault F; Hurwitz BL; Sullivan MB
    PeerJ; 2015; 3():e985. PubMed ID: 26038737
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes.
    Kogawa M; Hosokawa M; Nishikawa Y; Mori K; Takeyama H
    Sci Rep; 2018 Feb; 8(1):2059. PubMed ID: 29391438
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Optimizing
    Roux S; Trubl G; Goudeau D; Nath N; Couradeau E; Ahlgren NA; Zhan Y; Marsan D; Chen F; Fuhrman JA; Northen TR; Sullivan MB; Rich VI; Malmstrom RR; Eloe-Fadrosh EA
    PeerJ; 2019; 7():e6902. PubMed ID: 31119088
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis.
    López-Escardó D; Grau-Bové X; Guillaumet-Adkins A; Gut M; Sieracki ME; Ruiz-Trillo I
    Sci Rep; 2017 Sep; 7(1):11025. PubMed ID: 28887541
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
    Lin HH; Liao YC
    PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes.
    Gupta A; Kumar S; Prasoodanan VP; Harish K; Sharma AK; Sharma VK
    Front Microbiol; 2016; 7():469. PubMed ID: 27148174
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
    Parks DH; Imelfort M; Skennerton CT; Hugenholtz P; Tyson GW
    Genome Res; 2015 Jul; 25(7):1043-55. PubMed ID: 25977477
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Subsampled Assemblies and Hybrid Nucleotide Composition/Differential Coverage Binning for Genome-Resolved Metagenomics.
    Hug LA
    Methods Mol Biol; 2018; 1849():215-225. PubMed ID: 30298257
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Individual genome assembly from complex community short-read metagenomic datasets.
    Luo C; Tsementzi D; Kyrpides NC; Konstantinidis KT
    ISME J; 2012 Apr; 6(4):898-901. PubMed ID: 22030673
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
    Youssef NH; Farag IF; Hahn CR; Jarett J; Becraft E; Eloe-Fadrosh E; Lightfoot J; Bourgeois A; Cole T; Ferrante S; Truelock M; Marsh W; Jamaleddine M; Ricketts S; Simpson R; McFadden A; Hoff W; Ravin NV; Sievert S; Stepanauskas R; Woyke T; Elshahed M
    Appl Environ Microbiol; 2019 May; 85(10):. PubMed ID: 30902854
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Metagenomic Data Assembly - The Way of Decoding Unknown Microorganisms.
    Lapidus AL; Korobeynikov AI
    Front Microbiol; 2021; 12():613791. PubMed ID: 33833738
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil.
    Alteio LV; Schulz F; Seshadri R; Varghese N; Rodriguez-Reillo W; Ryan E; Goudeau D; Eichorst SA; Malmstrom RR; Bowers RM; Katz LA; Blanchard JL; Woyke T
    mSystems; 2020 Mar; 5(2):. PubMed ID: 32156798
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Ecological Genomics of the Uncultivated Marine Roseobacter Lineage CHAB-I-5.
    Zhang Y; Sun Y; Jiao N; Stepanauskas R; Luo H
    Appl Environ Microbiol; 2016 Jan; 82(7):2100-2111. PubMed ID: 26826224
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.