These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

266 related articles for article (PubMed ID: 26914206)

  • 21. The native cistrome and sequence motif families of the maize ear.
    Savadel SD; Hartwig T; Turpin ZM; Vera DL; Lung PY; Sui X; Blank M; Frommer WB; Dennis JH; Zhang J; Bass HW
    PLoS Genet; 2021 Aug; 17(8):e1009689. PubMed ID: 34383745
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Bivariate Genomic Footprinting Detects Changes in Transcription Factor Activity.
    Baek S; Goldstein I; Hager GL
    Cell Rep; 2017 May; 19(8):1710-1722. PubMed ID: 28538187
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Mapping nucleosome positions using DNase-seq.
    Zhong J; Luo K; Winter PS; Crawford GE; Iversen ES; Hartemink AJ
    Genome Res; 2016 Mar; 26(3):351-64. PubMed ID: 26772197
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling.
    Karabacak Calviello A; Hirsekorn A; Wurmus R; Yusuf D; Ohler U
    Genome Biol; 2019 Feb; 20(1):42. PubMed ID: 30791920
    [TBL] [Abstract][Full Text] [Related]  

  • 25. DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments.
    Wu F; Olson BG; Yao J
    J Vis Exp; 2016 Jan; (107):e53620. PubMed ID: 26862720
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Defining Regulatory Elements in the Human Genome Using Nucleosome Occupancy and Methylome Sequencing (NOMe-Seq).
    Rhie SK; Schreiner S; Farnham PJ
    Methods Mol Biol; 2018; 1766():209-229. PubMed ID: 29605855
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Genome-scale mapping of DNase I hypersensitivity.
    John S; Sabo PJ; Canfield TK; Lee K; Vong S; Weaver M; Wang H; Vierstra J; Reynolds AP; Thurman RE; Stamatoyannopoulos JA
    Curr Protoc Mol Biol; 2013 Jul; Chapter 27():Unit 21.27. PubMed ID: 23821440
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Genome-wide mapping of nucleosome occupancy, histone modifications, and gene expression using next-generation sequencing technology.
    Wei G; Hu G; Cui K; Zhao K
    Methods Enzymol; 2012; 513():297-313. PubMed ID: 22929775
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Genome-Wide Identification of Regulatory DNA Elements in Crop Plants.
    Li Z; Wang K
    Methods Mol Biol; 2020; 2072():85-99. PubMed ID: 31541440
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Global reference mapping of human transcription factor footprints.
    Vierstra J; Lazar J; Sandstrom R; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Haugen E; Rynes E; Reynolds A; Nelson J; Johnson A; Frerker M; Buckley M; Kaul R; Meuleman W; Stamatoyannopoulos JA
    Nature; 2020 Jul; 583(7818):729-736. PubMed ID: 32728250
    [TBL] [Abstract][Full Text] [Related]  

  • 31. High-resolution mapping and characterization of open chromatin across the genome.
    Boyle AP; Davis S; Shulha HP; Meltzer P; Margulies EH; Weng Z; Furey TS; Crawford GE
    Cell; 2008 Jan; 132(2):311-22. PubMed ID: 18243105
    [TBL] [Abstract][Full Text] [Related]  

  • 32. DEBrowser: interactive differential expression analysis and visualization tool for count data.
    Kucukural A; Yukselen O; Ozata DM; Moore MJ; Garber M
    BMC Genomics; 2019 Jan; 20(1):6. PubMed ID: 30611200
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Wellington-bootstrap: differential DNase-seq footprinting identifies cell-type determining transcription factors.
    Piper J; Assi SA; Cauchy P; Ladroue C; Cockerill PN; Bonifer C; Ott S
    BMC Genomics; 2015 Nov; 16():1000. PubMed ID: 26608661
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Genome-wide mapping of DNase I hypersensitive sites in rare cell populations using single-cell DNase sequencing.
    Cooper J; Ding Y; Song J; Zhao K
    Nat Protoc; 2017 Nov; 12(11):2342-2354. PubMed ID: 29022941
    [TBL] [Abstract][Full Text] [Related]  

  • 35. ATAC2GRN: optimized ATAC-seq and DNase1-seq pipelines for rapid and accurate genome regulatory network inference.
    Pranzatelli TJF; Michael DG; Chiorini JA
    BMC Genomics; 2018 Jul; 19(1):563. PubMed ID: 30064353
    [TBL] [Abstract][Full Text] [Related]  

  • 36. High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.
    Mitra S; Shcherbakova IV; Altman RB; Brenowitz M; Laederach A
    Nucleic Acids Res; 2008 Jun; 36(11):e63. PubMed ID: 18477638
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Comparative evaluation of DNase-seq footprint identification strategies.
    Barozzi I; Bora P; Morelli MJ
    Front Genet; 2014; 5():278. PubMed ID: 25177346
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Quantitative analysis of genome-wide chromatin remodeling.
    Baek S; Sung MH; Hager GL
    Methods Mol Biol; 2012; 833():433-41. PubMed ID: 22183609
    [TBL] [Abstract][Full Text] [Related]  

  • 39. An expansive human regulatory lexicon encoded in transcription factor footprints.
    Neph S; Vierstra J; Stergachis AB; Reynolds AP; Haugen E; Vernot B; Thurman RE; John S; Sandstrom R; Johnson AK; Maurano MT; Humbert R; Rynes E; Wang H; Vong S; Lee K; Bates D; Diegel M; Roach V; Dunn D; Neri J; Schafer A; Hansen RS; Kutyavin T; Giste E; Weaver M; Canfield T; Sabo P; Zhang M; Balasundaram G; Byron R; MacCoss MJ; Akey JM; Bender MA; Groudine M; Kaul R; Stamatoyannopoulos JA
    Nature; 2012 Sep; 489(7414):83-90. PubMed ID: 22955618
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Genome assembly and haplotyping with Hi-C.
    Korbel JO; Lee C
    Nat Biotechnol; 2013 Dec; 31(12):1099-101. PubMed ID: 24316648
    [No Abstract]   [Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.