1034 related articles for article (PubMed ID: 26921390)
1. ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.
Huerta-Cepas J; Serra F; Bork P
Mol Biol Evol; 2016 Jun; 33(6):1635-8. PubMed ID: 26921390
[TBL] [Abstract][Full Text] [Related]
2. ETE: a python Environment for Tree Exploration.
Huerta-Cepas J; Dopazo J; Gabaldón T
BMC Bioinformatics; 2010 Jan; 11():24. PubMed ID: 20070885
[TBL] [Abstract][Full Text] [Related]
3. Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
Hartmann S; Vision TJ
BMC Evol Biol; 2008 Mar; 8():95. PubMed ID: 18366758
[TBL] [Abstract][Full Text] [Related]
4. PhyloCloud: an online platform for making sense of phylogenomic data.
Deng Z; Botas J; Cantalapiedra CP; Hernández-Plaza A; Burguet-Castell J; Huerta-Cepas J
Nucleic Acids Res; 2022 Jul; 50(W1):W577-W582. PubMed ID: 35544233
[TBL] [Abstract][Full Text] [Related]
5. Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.
Sánchez R; Serra F; Tárraga J; Medina I; Carbonell J; Pulido L; de María A; Capella-Gutíerrez S; Huerta-Cepas J; Gabaldón T; Dopazo J; Dopazo H
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W470-4. PubMed ID: 21646336
[TBL] [Abstract][Full Text] [Related]
6. NCBI Genome Workbench: Desktop Software for Comparative Genomics, Visualization, and GenBank Data Submission.
Kuznetsov A; Bollin CJ
Methods Mol Biol; 2021; 2231():261-295. PubMed ID: 33289898
[TBL] [Abstract][Full Text] [Related]
7. Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.
Tárraga J; Medina I; Arbiza L; Huerta-Cepas J; Gabaldón T; Dopazo J; Dopazo H
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W38-42. PubMed ID: 17452346
[TBL] [Abstract][Full Text] [Related]
8. MultiPhyl: a high-throughput phylogenomics webserver using distributed computing.
Keane TM; Naughton TJ; McInerney JO
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W33-7. PubMed ID: 17553837
[TBL] [Abstract][Full Text] [Related]
9. AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses.
Kumar S; Skjaeveland A; Orr RJ; Enger P; Ruden T; Mevik BH; Burki F; Botnen A; Shalchian-Tabrizi K
BMC Bioinformatics; 2009 Oct; 10():357. PubMed ID: 19863793
[TBL] [Abstract][Full Text] [Related]
10. Accounting for alignment uncertainty in phylogenomics.
Wu M; Chatterji S; Eisen JA
PLoS One; 2012; 7(1):e30288. PubMed ID: 22272325
[TBL] [Abstract][Full Text] [Related]
11. Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis.
Glanville JG; Kirshner D; Krishnamurthy N; Sjölander K
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W27-32. PubMed ID: 17488835
[TBL] [Abstract][Full Text] [Related]
12. imPhy: Imputing Phylogenetic Trees with Missing Information Using Mathematical Programming.
Yasui N; Vogiatzis C; Yoshida R; Fukumizu K
IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(4):1222-1230. PubMed ID: 30507538
[TBL] [Abstract][Full Text] [Related]
13. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
14. Ensembl comparative genomics resources.
Herrero J; Muffato M; Beal K; Fitzgerald S; Gordon L; Pignatelli M; Vilella AJ; Searle SM; Amode R; Brent S; Spooner W; Kulesha E; Yates A; Flicek P
Database (Oxford); 2016; 2016():. PubMed ID: 26896847
[TBL] [Abstract][Full Text] [Related]
15. A Guide to Phylogenomic Inference.
Patané JSL; Martins J; Setubal JC
Methods Mol Biol; 2024; 2802():267-345. PubMed ID: 38819564
[TBL] [Abstract][Full Text] [Related]
16. PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.
Huerta-Cepas J; Capella-Gutierrez S; Pryszcz LP; Denisov I; Kormes D; Marcet-Houben M; Gabaldón T
Nucleic Acids Res; 2011 Jan; 39(Database issue):D556-60. PubMed ID: 21075798
[TBL] [Abstract][Full Text] [Related]
17. phyloXML: XML for evolutionary biology and comparative genomics.
Han MV; Zmasek CM
BMC Bioinformatics; 2009 Oct; 10():356. PubMed ID: 19860910
[TBL] [Abstract][Full Text] [Related]
18. Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences.
Auch AF; Henz SR; Holland BR; Göker M
BMC Bioinformatics; 2006 Jul; 7():350. PubMed ID: 16854218
[TBL] [Abstract][Full Text] [Related]
19. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
Bastien O; Ortet P; Roy S; Maréchal E
BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
[TBL] [Abstract][Full Text] [Related]
20. Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches.
Smith SA; Beaulieu JM; Donoghue MJ
BMC Evol Biol; 2009 Feb; 9():37. PubMed ID: 19210768
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]