BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1034 related articles for article (PubMed ID: 26921390)

  • 1. ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.
    Huerta-Cepas J; Serra F; Bork P
    Mol Biol Evol; 2016 Jun; 33(6):1635-8. PubMed ID: 26921390
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ETE: a python Environment for Tree Exploration.
    Huerta-Cepas J; Dopazo J; Gabaldón T
    BMC Bioinformatics; 2010 Jan; 11():24. PubMed ID: 20070885
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
    Hartmann S; Vision TJ
    BMC Evol Biol; 2008 Mar; 8():95. PubMed ID: 18366758
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PhyloCloud: an online platform for making sense of phylogenomic data.
    Deng Z; Botas J; Cantalapiedra CP; Hernández-Plaza A; Burguet-Castell J; Huerta-Cepas J
    Nucleic Acids Res; 2022 Jul; 50(W1):W577-W582. PubMed ID: 35544233
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.
    Sánchez R; Serra F; Tárraga J; Medina I; Carbonell J; Pulido L; de María A; Capella-Gutíerrez S; Huerta-Cepas J; Gabaldón T; Dopazo J; Dopazo H
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W470-4. PubMed ID: 21646336
    [TBL] [Abstract][Full Text] [Related]  

  • 6. NCBI Genome Workbench: Desktop Software for Comparative Genomics, Visualization, and GenBank Data Submission.
    Kuznetsov A; Bollin CJ
    Methods Mol Biol; 2021; 2231():261-295. PubMed ID: 33289898
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.
    Tárraga J; Medina I; Arbiza L; Huerta-Cepas J; Gabaldón T; Dopazo J; Dopazo H
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W38-42. PubMed ID: 17452346
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MultiPhyl: a high-throughput phylogenomics webserver using distributed computing.
    Keane TM; Naughton TJ; McInerney JO
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W33-7. PubMed ID: 17553837
    [TBL] [Abstract][Full Text] [Related]  

  • 9. AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses.
    Kumar S; Skjaeveland A; Orr RJ; Enger P; Ruden T; Mevik BH; Burki F; Botnen A; Shalchian-Tabrizi K
    BMC Bioinformatics; 2009 Oct; 10():357. PubMed ID: 19863793
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Accounting for alignment uncertainty in phylogenomics.
    Wu M; Chatterji S; Eisen JA
    PLoS One; 2012; 7(1):e30288. PubMed ID: 22272325
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis.
    Glanville JG; Kirshner D; Krishnamurthy N; Sjölander K
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W27-32. PubMed ID: 17488835
    [TBL] [Abstract][Full Text] [Related]  

  • 12. imPhy: Imputing Phylogenetic Trees with Missing Information Using Mathematical Programming.
    Yasui N; Vogiatzis C; Yoshida R; Fukumizu K
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(4):1222-1230. PubMed ID: 30507538
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ensembl comparative genomics resources.
    Herrero J; Muffato M; Beal K; Fitzgerald S; Gordon L; Pignatelli M; Vilella AJ; Searle SM; Amode R; Brent S; Spooner W; Kulesha E; Yates A; Flicek P
    Database (Oxford); 2016; 2016():. PubMed ID: 26896847
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A Guide to Phylogenomic Inference.
    Patané JSL; Martins J; Setubal JC
    Methods Mol Biol; 2024; 2802():267-345. PubMed ID: 38819564
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.
    Huerta-Cepas J; Capella-Gutierrez S; Pryszcz LP; Denisov I; Kormes D; Marcet-Houben M; Gabaldón T
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D556-60. PubMed ID: 21075798
    [TBL] [Abstract][Full Text] [Related]  

  • 17. phyloXML: XML for evolutionary biology and comparative genomics.
    Han MV; Zmasek CM
    BMC Bioinformatics; 2009 Oct; 10():356. PubMed ID: 19860910
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences.
    Auch AF; Henz SR; Holland BR; Göker M
    BMC Bioinformatics; 2006 Jul; 7():350. PubMed ID: 16854218
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
    Bastien O; Ortet P; Roy S; Maréchal E
    BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches.
    Smith SA; Beaulieu JM; Donoghue MJ
    BMC Evol Biol; 2009 Feb; 9():37. PubMed ID: 19210768
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 52.