BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

271 related articles for article (PubMed ID: 26936376)

  • 1. HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure.
    Zou C; Zhang Y; Ouyang Z
    Genome Biol; 2016 Mar; 17():40. PubMed ID: 26936376
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Chromatin 3D structure reconstruction with consideration of adjacency relationship among genomic loci.
    Li FZ; Liu ZE; Li XY; Bu LM; Bu HX; Liu H; Zhang CM
    BMC Bioinformatics; 2020 Jul; 21(1):272. PubMed ID: 32611376
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Large-scale 3D chromatin reconstruction from chromosomal contacts.
    Zhang Y; Liu W; Lin Y; Ng YK; Li S
    BMC Genomics; 2019 Apr; 20(Suppl 2):186. PubMed ID: 30967119
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Reconstructing spatial organizations of chromosomes through manifold learning.
    Zhu G; Deng W; Hu H; Ma R; Zhang S; Yang J; Peng J; Kaplan T; Zeng J
    Nucleic Acids Res; 2018 May; 46(8):e50. PubMed ID: 29408992
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact data.
    Oluwadare O; Zhang Y; Cheng J
    BMC Genomics; 2018 Feb; 19(1):161. PubMed ID: 29471801
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reconstruction of 3D genome architecture via a two-stage algorithm.
    Segal MR; Bengtsson HL
    BMC Bioinformatics; 2015 Nov; 16():373. PubMed ID: 26553003
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling.
    Rousseau M; Fraser J; Ferraiuolo MA; Dostie J; Blanchette M
    BMC Bioinformatics; 2011 Oct; 12():414. PubMed ID: 22026390
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Four-Dimensional Chromosome Structure Prediction.
    Highsmith M; Cheng J
    Int J Mol Sci; 2021 Sep; 22(18):. PubMed ID: 34575948
    [TBL] [Abstract][Full Text] [Related]  

  • 9. 3DIV: A 3D-genome Interaction Viewer and database.
    Yang D; Jang I; Choi J; Kim MS; Lee AJ; Kim H; Eom J; Kim D; Jung I; Lee B
    Nucleic Acids Res; 2018 Jan; 46(D1):D52-D57. PubMed ID: 29106613
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assessing stationary distributions derived from chromatin contact maps.
    Segal MR; Fletez-Brant K
    BMC Bioinformatics; 2020 Feb; 21(1):73. PubMed ID: 32093610
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluation and comparison of methods for recapitulation of 3D spatial chromatin structures.
    Park J; Lin S
    Brief Bioinform; 2019 Jul; 20(4):1205-1214. PubMed ID: 29091999
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Population-based 3D genome structure analysis reveals driving forces in spatial genome organization.
    Tjong H; Li W; Kalhor R; Dai C; Hao S; Gong K; Zhou Y; Li H; Zhou XJ; Le Gros MA; Larabell CA; Chen L; Alber F
    Proc Natl Acad Sci U S A; 2016 Mar; 113(12):E1663-72. PubMed ID: 26951677
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Transferable model for chromosome architecture.
    Di Pierro M; Zhang B; Aiden EL; Wolynes PG; Onuchic JN
    Proc Natl Acad Sci U S A; 2016 Oct; 113(43):12168-12173. PubMed ID: 27688758
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF.
    Yang Y; Zhang Y; Ren B; Dixon JR; Ma J
    Cell Syst; 2019 Jun; 8(6):494-505.e14. PubMed ID: 31229558
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Reconstruct high-resolution 3D genome structures for diverse cell-types using FLAMINGO.
    Wang H; Yang J; Zhang Y; Qian J; Wang J
    Nat Commun; 2022 May; 13(1):2645. PubMed ID: 35551182
    [TBL] [Abstract][Full Text] [Related]  

  • 16. De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture.
    Di Pierro M; Cheng RR; Lieberman Aiden E; Wolynes PG; Onuchic JN
    Proc Natl Acad Sci U S A; 2017 Nov; 114(46):12126-12131. PubMed ID: 29087948
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genome structure determination via 3C-based data integration by the Integrative Modeling Platform.
    BaĆ¹ D; Marti-Renom MA
    Methods; 2012 Nov; 58(3):300-6. PubMed ID: 22522224
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computational methods for predicting 3D genomic organization from high-resolution chromosome conformation capture data.
    MacKay K; Kusalik A
    Brief Funct Genomics; 2020 Jul; 19(4):292-308. PubMed ID: 32353112
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data.
    Oluwadare O; Highsmith M; Turner D; Lieberman Aiden E; Cheng J
    BMC Mol Cell Biol; 2020 Aug; 21(1):60. PubMed ID: 32758136
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Three-dimensional chromatin ensemble reconstruction via stochastic embedding.
    Guarnera E; Tan ZW; Berezovsky IN
    Structure; 2021 Jun; 29(6):622-634.e3. PubMed ID: 33567266
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.