296 related articles for article (PubMed ID: 26950747)
1. Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases.
Marbach D; Lamparter D; Quon G; Kellis M; Kutalik Z; Bergmann S
Nat Methods; 2016 Apr; 13(4):366-70. PubMed ID: 26950747
[TBL] [Abstract][Full Text] [Related]
2. Integrative analysis of 111 reference human epigenomes.
; Kundaje A; Meuleman W; Ernst J; Bilenky M; Yen A; Heravi-Moussavi A; Kheradpour P; Zhang Z; Wang J; Ziller MJ; Amin V; Whitaker JW; Schultz MD; Ward LD; Sarkar A; Quon G; Sandstrom RS; Eaton ML; Wu YC; Pfenning AR; Wang X; Claussnitzer M; Liu Y; Coarfa C; Harris RA; Shoresh N; Epstein CB; Gjoneska E; Leung D; Xie W; Hawkins RD; Lister R; Hong C; Gascard P; Mungall AJ; Moore R; Chuah E; Tam A; Canfield TK; Hansen RS; Kaul R; Sabo PJ; Bansal MS; Carles A; Dixon JR; Farh KH; Feizi S; Karlic R; Kim AR; Kulkarni A; Li D; Lowdon R; Elliott G; Mercer TR; Neph SJ; Onuchic V; Polak P; Rajagopal N; Ray P; Sallari RC; Siebenthall KT; Sinnott-Armstrong NA; Stevens M; Thurman RE; Wu J; Zhang B; Zhou X; Beaudet AE; Boyer LA; De Jager PL; Farnham PJ; Fisher SJ; Haussler D; Jones SJ; Li W; Marra MA; McManus MT; Sunyaev S; Thomson JA; Tlsty TD; Tsai LH; Wang W; Waterland RA; Zhang MQ; Chadwick LH; Bernstein BE; Costello JF; Ecker JR; Hirst M; Meissner A; Milosavljevic A; Ren B; Stamatoyannopoulos JA; Wang T; Kellis M
Nature; 2015 Feb; 518(7539):317-30. PubMed ID: 25693563
[TBL] [Abstract][Full Text] [Related]
3. Prioritizing and characterizing functionally relevant genes across human tissues.
Somepalli G; Sahoo S; Singh A; Hannenhalli S
PLoS Comput Biol; 2021 Jul; 17(7):e1009194. PubMed ID: 34270548
[TBL] [Abstract][Full Text] [Related]
4. Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?
Yaschenko AE; Fenech M; Mazzoni-Putman S; Alonso JM; Stepanova AN
Curr Opin Plant Biol; 2022 Aug; 68():102241. PubMed ID: 35700675
[TBL] [Abstract][Full Text] [Related]
5. Understanding Tissue-Specific Gene Regulation.
Sonawane AR; Platig J; Fagny M; Chen CY; Paulson JN; Lopes-Ramos CM; DeMeo DL; Quackenbush J; Glass K; Kuijjer ML
Cell Rep; 2017 Oct; 21(4):1077-1088. PubMed ID: 29069589
[TBL] [Abstract][Full Text] [Related]
6. Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm.
Ding H; Douglass EF; Sonabend AM; Mela A; Bose S; Gonzalez C; Canoll PD; Sims PA; Alvarez MJ; Califano A
Nat Commun; 2018 Apr; 9(1):1471. PubMed ID: 29662057
[TBL] [Abstract][Full Text] [Related]
7. Complex small-world regulatory networks emerge from the 3D organisation of the human genome.
Brackley CA; Gilbert N; Michieletto D; Papantonis A; Pereira MCF; Cook PR; Marenduzzo D
Nat Commun; 2021 Oct; 12(1):5756. PubMed ID: 34599163
[TBL] [Abstract][Full Text] [Related]
8. The Impact of Genomic Variation on Function (IGVF) Consortium.
IGVF Consortium
ArXiv; 2023 Jul; ():. PubMed ID: 37547663
[TBL] [Abstract][Full Text] [Related]
9. Regulatory landscape in brain development and disease.
Spiess K; Won H
Curr Opin Genet Dev; 2020 Dec; 65():53-60. PubMed ID: 32563855
[TBL] [Abstract][Full Text] [Related]
10. Closing the gap: a roadmap to single-cell regulatory genomics.
Carnesecchi J; Lohmann I
Mol Syst Biol; 2020 May; 16(5):e9497. PubMed ID: 32430985
[TBL] [Abstract][Full Text] [Related]
11. Survey of variation in human transcription factors reveals prevalent DNA binding changes.
Barrera LA; Vedenko A; Kurland JV; Rogers JM; Gisselbrecht SS; Rossin EJ; Woodard J; Mariani L; Kock KH; Inukai S; Siggers T; Shokri L; Gordân R; Sahni N; Cotsapas C; Hao T; Yi S; Kellis M; Daly MJ; Vidal M; Hill DE; Bulyk ML
Science; 2016 Mar; 351(6280):1450-1454. PubMed ID: 27013732
[TBL] [Abstract][Full Text] [Related]
12. Discovery and validation of sub-threshold genome-wide association study loci using epigenomic signatures.
Wang X; Tucker NR; Rizki G; Mills R; Krijger PH; de Wit E; Subramanian V; Bartell E; Nguyen XX; Ye J; Leyton-Mange J; Dolmatova EV; van der Harst P; de Laat W; Ellinor PT; Newton-Cheh C; Milan DJ; Kellis M; Boyer LA
Elife; 2016 May; 5():. PubMed ID: 27162171
[TBL] [Abstract][Full Text] [Related]
13. TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions.
Han H; Cho JW; Lee S; Yun A; Kim H; Bae D; Yang S; Kim CY; Lee M; Kim E; Lee S; Kang B; Jeong D; Kim Y; Jeon HN; Jung H; Nam S; Chung M; Kim JH; Lee I
Nucleic Acids Res; 2018 Jan; 46(D1):D380-D386. PubMed ID: 29087512
[TBL] [Abstract][Full Text] [Related]
14. Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation.
Hanson C; Cairns J; Wang L; Sinha S
Genome Res; 2018 Aug; 28(8):1207-1216. PubMed ID: 29898900
[TBL] [Abstract][Full Text] [Related]
15. Identifying genetic modulators of the connectivity between transcription factors and their transcriptional targets.
Fazlollahi M; Muroff I; Lee E; Causton HC; Bussemaker HJ
Proc Natl Acad Sci U S A; 2016 Mar; 113(13):E1835-43. PubMed ID: 26966232
[TBL] [Abstract][Full Text] [Related]
16. Identifying noncoding risk variants using disease-relevant gene regulatory networks.
Gao L; Uzun Y; Gao P; He B; Ma X; Wang J; Han S; Tan K
Nat Commun; 2018 Feb; 9(1):702. PubMed ID: 29453388
[TBL] [Abstract][Full Text] [Related]
17. Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.
Zhu Z; Zhang F; Hu H; Bakshi A; Robinson MR; Powell JE; Montgomery GW; Goddard ME; Wray NR; Visscher PM; Yang J
Nat Genet; 2016 May; 48(5):481-7. PubMed ID: 27019110
[TBL] [Abstract][Full Text] [Related]
18. The 3D Genome as Moderator of Chromosomal Communication.
Dekker J; Mirny L
Cell; 2016 Mar; 164(6):1110-1121. PubMed ID: 26967279
[TBL] [Abstract][Full Text] [Related]
19. Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation.
Gamazon ER; Segrè AV; van de Bunt M; Wen X; Xi HS; Hormozdiari F; Ongen H; Konkashbaev A; Derks EM; Aguet F; Quan J; ; Nicolae DL; Eskin E; Kellis M; Getz G; McCarthy MI; Dermitzakis ET; Cox NJ; Ardlie KG
Nat Genet; 2018 Jul; 50(7):956-967. PubMed ID: 29955180
[TBL] [Abstract][Full Text] [Related]
20. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Van Nostrand EL; Pratt GA; Shishkin AA; Gelboin-Burkhart C; Fang MY; Sundararaman B; Blue SM; Nguyen TB; Surka C; Elkins K; Stanton R; Rigo F; Guttman M; Yeo GW
Nat Methods; 2016 Jun; 13(6):508-14. PubMed ID: 27018577
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
