236 related articles for article (PubMed ID: 26951544)
1. A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome.
Ettwiller L; Buswell J; Yigit E; Schildkraut I
BMC Genomics; 2016 Mar; 17():199. PubMed ID: 26951544
[TBL] [Abstract][Full Text] [Related]
2. ToNER: A tool for identifying nucleotide enrichment signals in feature-enriched RNA-seq data.
Promworn Y; Kaewprommal P; Shaw PJ; Intarapanich A; Tongsima S; Piriyapongsa J
PLoS One; 2017; 12(5):e0178483. PubMed ID: 28542466
[TBL] [Abstract][Full Text] [Related]
3. TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens.
Prados J; Linder P; Redder P
BMC Genomics; 2016 Nov; 17(1):849. PubMed ID: 27806702
[TBL] [Abstract][Full Text] [Related]
4. RNA-Seq-Based Transcript Structure Analysis with TrBorderExt.
Wang Y; Sun MA; White AP
Methods Mol Biol; 2018; 1751():89-99. PubMed ID: 29508291
[TBL] [Abstract][Full Text] [Related]
5. SMRT-Cappable-seq reveals complex operon variants in bacteria.
Yan B; Boitano M; Clark TA; Ettwiller L
Nat Commun; 2018 Sep; 9(1):3676. PubMed ID: 30201986
[TBL] [Abstract][Full Text] [Related]
6. Genome-wide determination of transcription start sites reveals new insights into promoter structures in the actinomycete Corynebacterium glutamicum.
Albersmeier A; Pfeifer-Sancar K; Rückert C; Kalinowski J
J Biotechnol; 2017 Sep; 257():99-109. PubMed ID: 28412515
[TBL] [Abstract][Full Text] [Related]
7. High-throughput detection of RNA processing in bacteria.
Gill EE; Chan LS; Winsor GL; Dobson N; Lo R; Ho Sui SJ; Dhillon BK; Taylor PK; Shrestha R; Spencer C; Hancock REW; Unrau PJ; Brinkman FSL
BMC Genomics; 2018 Mar; 19(1):223. PubMed ID: 29587634
[TBL] [Abstract][Full Text] [Related]
8. Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli.
Thomason MK; Bischler T; Eisenbart SK; Förstner KU; Zhang A; Herbig A; Nieselt K; Sharma CM; Storz G
J Bacteriol; 2015 Jan; 197(1):18-28. PubMed ID: 25266388
[TBL] [Abstract][Full Text] [Related]
9. Obtaining Detailed Phage Transcriptomes Using ONT-Cappable-Seq.
Putzeys L; Intizar D; Lavigne R; Boon M
Methods Mol Biol; 2024; 2793():207-235. PubMed ID: 38526733
[TBL] [Abstract][Full Text] [Related]
10. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis.
Zhang R; Kuo R; Coulter M; Calixto CPG; Entizne JC; Guo W; Marquez Y; Milne L; Riegler S; Matsui A; Tanaka M; Harvey S; Gao Y; Wießner-Kroh T; Paniagua A; Crespi M; Denby K; Hur AB; Huq E; Jantsch M; Jarmolowski A; Koester T; Laubinger S; Li QQ; Gu L; Seki M; Staiger D; Sunkar R; Szweykowska-Kulinska Z; Tu SL; Wachter A; Waugh R; Xiong L; Zhang XN; Conesa A; Reddy ASN; Barta A; Kalyna M; Brown JWS
Genome Biol; 2022 Jul; 23(1):149. PubMed ID: 35799267
[TBL] [Abstract][Full Text] [Related]
11. Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori.
Bischler T; Tan HS; Nieselt K; Sharma CM
Methods; 2015 Sep; 86():89-101. PubMed ID: 26091613
[TBL] [Abstract][Full Text] [Related]
12. Coupled Transcriptomics for Differential Expression Analysis and Determination of Transcription Start Sites: Design and Bioinformatics.
Rodríguez-García A; Sola-Landa A; Pérez-Redondo R
Methods Mol Biol; 2021; 2296():263-278. PubMed ID: 33977454
[TBL] [Abstract][Full Text] [Related]
13. Massively Systematic Transcript End Readout, "MASTER": Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields.
Vvedenskaya IO; Zhang Y; Goldman SR; Valenti A; Visone V; Taylor DM; Ebright RH; Nickels BE
Mol Cell; 2015 Dec; 60(6):953-65. PubMed ID: 26626484
[TBL] [Abstract][Full Text] [Related]
14. The transcriptional landscape of Chlamydia pneumoniae.
Albrecht M; Sharma CM; Dittrich MT; Müller T; Reinhardt R; Vogel J; Rudel T
Genome Biol; 2011 Oct; 12(10):R98. PubMed ID: 21989159
[TBL] [Abstract][Full Text] [Related]
15. Comprehensive determination of transcription start sites derived from all RNA polymerases using ReCappable-seq.
Yan B; Tzertzinis G; Schildkraut I; Ettwiller L
Genome Res; 2022 Jan; 32(1):162-174. PubMed ID: 34815308
[TBL] [Abstract][Full Text] [Related]
16. Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation.
Čuklina J; Hahn J; Imakaev M; Omasits U; Förstner KU; Ljubimov N; Goebel M; Pessi G; Fischer HM; Ahrens CH; Gelfand MS; Evguenieva-Hackenberg E
BMC Genomics; 2016 Apr; 17():302. PubMed ID: 27107716
[TBL] [Abstract][Full Text] [Related]
17. An empirical strategy to detect bacterial transcript structure from directional RNA-seq transcriptome data.
Wang Y; MacKenzie KD; White AP
BMC Genomics; 2015 May; 16(1):359. PubMed ID: 25947005
[TBL] [Abstract][Full Text] [Related]
18. Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology.
Brito LF; Irla M; Kalinowski J; Wendisch VF
BMC Genomics; 2017 Nov; 18(1):846. PubMed ID: 29100491
[TBL] [Abstract][Full Text] [Related]
19. Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq.
Policastro RA; Raborn RT; Brendel VP; Zentner GE
Genome Res; 2020 Jun; 30(6):910-923. PubMed ID: 32660958
[TBL] [Abstract][Full Text] [Related]
20. Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host nematode RNA by Cappable-seq™.
Luck AN; Slatko BE; Foster JM
PLoS One; 2017; 12(3):e0173186. PubMed ID: 28291780
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]