BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

499 related articles for article (PubMed ID: 26956673)

  • 1. CoeViz: a web-based tool for coevolution analysis of protein residues.
    Baker FN; Porollo A
    BMC Bioinformatics; 2016 Mar; 17():119. PubMed ID: 26956673
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CoeViz 2: Protein Graphs Derived from Amino Acid Covariance.
    Corcoran D; Maltbie N; Sudalairaj S; Baker FN; Hirschfeld J; Porollo A
    Front Bioinform; 2021; 1():. PubMed ID: 35694032
    [TBL] [Abstract][Full Text] [Related]  

  • 3. firestar--prediction of functionally important residues using structural templates and alignment reliability.
    López G; Valencia A; Tress ML
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W573-7. PubMed ID: 17584799
    [TBL] [Abstract][Full Text] [Related]  

  • 4. iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families.
    Oteri F; Sarti E; Nadalin F; Carbone A
    Nucleic Acids Res; 2022 Jul; 50(W1):W412-W419. PubMed ID: 35670671
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.
    Porollo A; Meller J
    BMC Bioinformatics; 2007 Aug; 8():316. PubMed ID: 17727718
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins.
    Landgraf R; Xenarios I; Eisenberg D
    J Mol Biol; 2001 Apr; 307(5):1487-502. PubMed ID: 11292355
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of topological clustering within protein networks using edge metrics that evaluate full sequence, full structure, and active site microenvironment similarity.
    Leuthaeuser JB; Knutson ST; Kumar K; Babbitt PC; Fetrow JS
    Protein Sci; 2015 Sep; 24(9):1423-39. PubMed ID: 26073648
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein contact prediction by integrating deep multiple sequence alignments, coevolution and machine learning.
    Adhikari B; Hou J; Cheng J
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):84-96. PubMed ID: 29047157
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families.
    Suplatov D; Sharapova Y; Timonina D; Kopylov K; Švedas V
    J Bioinform Comput Biol; 2018 Apr; 16(2):1840005. PubMed ID: 29361894
    [TBL] [Abstract][Full Text] [Related]  

  • 10. INTREPID: a web server for prediction of functionally important residues by evolutionary analysis.
    Sankararaman S; Kolaczkowski B; Sjölander K
    Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W390-5. PubMed ID: 19443452
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Sequence coevolution between RNA and protein characterized by mutual information between residue triplets.
    Brandman R; Brandman Y; Pande VS
    PLoS One; 2012; 7(1):e30022. PubMed ID: 22279560
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
    Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
    Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CLAP: a web-server for automatic classification of proteins with special reference to multi-domain proteins.
    Gnanavel M; Mehrotra P; Rakshambikai R; Martin J; Srinivasan N; Bhaskara RM
    BMC Bioinformatics; 2014 Oct; 15(1):343. PubMed ID: 25282152
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.
    Gloor GB; Martin LC; Wahl LM; Dunn SD
    Biochemistry; 2005 May; 44(19):7156-65. PubMed ID: 15882054
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Origins of coevolution between residues distant in protein 3D structures.
    Anishchenko I; Ovchinnikov S; Kamisetty H; Baker D
    Proc Natl Acad Sci U S A; 2017 Aug; 114(34):9122-9127. PubMed ID: 28784799
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Conservation of coevolving protein interfaces bridges prokaryote-eukaryote homologies in the twilight zone.
    Rodriguez-Rivas J; Marsili S; Juan D; Valencia A
    Proc Natl Acad Sci U S A; 2016 Dec; 113(52):15018-15023. PubMed ID: 27965389
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A coevolutionary residue network at the site of a functionally important conformational change in a phosphohexomutase enzyme family.
    Lee Y; Mick J; Furdui C; Beamer LJ
    PLoS One; 2012; 7(6):e38114. PubMed ID: 22685552
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.
    Wang K; Horst JA; Cheng G; Nickle DC; Samudrala R
    PLoS Comput Biol; 2008 Sep; 4(9):e1000181. PubMed ID: 18818722
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Identification of subfamily-specific sites based on active sites modeling and clustering.
    de Melo-Minardi RC; Bastard K; Artiguenave F
    Bioinformatics; 2010 Dec; 26(24):3075-82. PubMed ID: 20980272
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information.
    Buslje CM; Santos J; Delfino JM; Nielsen M
    Bioinformatics; 2009 May; 25(9):1125-31. PubMed ID: 19276150
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 25.