124 related articles for article (PubMed ID: 26987840)
1. On the comparison of regulatory sequences with multiple resolution Entropic Profiles.
Comin M; Antonello M
BMC Bioinformatics; 2016 Mar; 17():130. PubMed ID: 26987840
[TBL] [Abstract][Full Text] [Related]
2. Beyond Fixed-Resolution Alignment-Free Measures for Mammalian Enhancers Sequence Comparison.
Comin M; Verzotto D
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(4):628-37. PubMed ID: 26356333
[TBL] [Abstract][Full Text] [Related]
3. Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.
Göke J; Schulz MH; Lasserre J; Vingron M
Bioinformatics; 2012 Mar; 28(5):656-63. PubMed ID: 22247280
[TBL] [Abstract][Full Text] [Related]
4. An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.
Arunachalam M; Jayasurya K; Tomancak P; Ohler U
Bioinformatics; 2010 Sep; 26(17):2109-15. PubMed ID: 20624780
[TBL] [Abstract][Full Text] [Related]
5. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
Niu M; Tabari ES; Su Z
BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
[TBL] [Abstract][Full Text] [Related]
6. A statistical method for alignment-free comparison of regulatory sequences.
Kantorovitz MR; Robinson GE; Sinha S
Bioinformatics; 2007 Jul; 23(13):i249-55. PubMed ID: 17646303
[TBL] [Abstract][Full Text] [Related]
7. Fast Entropic Profiler: An Information Theoretic Approach for the Discovery of Patterns in Genomes.
Comin M; Antonello M
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(3):500-9. PubMed ID: 26356018
[TBL] [Abstract][Full Text] [Related]
8. Fast model-based protein homology detection without alignment.
Hochreiter S; Heusel M; Obermayer K
Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
[TBL] [Abstract][Full Text] [Related]
9. GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA; Eisen MB
BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071
[TBL] [Abstract][Full Text] [Related]
10. cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila.
Yang TH; Wang CC; Hung PC; Wu WS
BMC Syst Biol; 2014; 8 Suppl 4(Suppl 4):S8. PubMed ID: 25521507
[TBL] [Abstract][Full Text] [Related]
11. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
Pierstorff N; Bergman CM; Wiehe T
Bioinformatics; 2006 Dec; 22(23):2858-64. PubMed ID: 17032682
[TBL] [Abstract][Full Text] [Related]
12. K2 and K2*: efficient alignment-free sequence similarity measurement based on Kendall statistics.
Lin J; Adjeroh DA; Jiang BH; Jiang Y
Bioinformatics; 2018 May; 34(10):1682-1689. PubMed ID: 29253072
[TBL] [Abstract][Full Text] [Related]
13. Alignment free comparison: k word voting model and its applications.
Yang L; Zhang X; Zhu H
J Theor Biol; 2013 Oct; 335():276-82. PubMed ID: 23850481
[TBL] [Abstract][Full Text] [Related]
14. i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly.
Imrichová H; Hulselmans G; Atak ZK; Potier D; Aerts S
Nucleic Acids Res; 2015 Jul; 43(W1):W57-64. PubMed ID: 25925574
[TBL] [Abstract][Full Text] [Related]
15. Clustering of reads with alignment-free measures and quality values.
Comin M; Leoni A; Schimd M
Algorithms Mol Biol; 2015; 10():4. PubMed ID: 25691913
[TBL] [Abstract][Full Text] [Related]
16. Using transgenic reporter assays to functionally characterize enhancers in animals.
Kvon EZ
Genomics; 2015 Sep; 106(3):185-192. PubMed ID: 26072435
[TBL] [Abstract][Full Text] [Related]
17. Similarity evaluation of DNA sequences based on frequent patterns and entropy.
Xie X; Guan J; Zhou S
BMC Genomics; 2015; 16 Suppl 3(Suppl 3):S5. PubMed ID: 25707937
[TBL] [Abstract][Full Text] [Related]
18. Multiple alignment-free sequence comparison.
Ren J; Song K; Sun F; Deng M; Reinert G
Bioinformatics; 2013 Nov; 29(21):2690-8. PubMed ID: 23990418
[TBL] [Abstract][Full Text] [Related]
19. Sequence Comparison Without Alignment: The SpaM Approaches.
Morgenstern B
Methods Mol Biol; 2021; 2231():121-134. PubMed ID: 33289890
[TBL] [Abstract][Full Text] [Related]
20. iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition.
Liu B; Fang L; Long R; Lan X; Chou KC
Bioinformatics; 2016 Feb; 32(3):362-9. PubMed ID: 26476782
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
