BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

741 related articles for article (PubMed ID: 27008018)

  • 1. Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes.
    Baek S; Sung MH
    Methods Mol Biol; 2016; 1418():225-40. PubMed ID: 27008018
    [TBL] [Abstract][Full Text] [Related]  

  • 2. XL-DNase-seq: improved footprinting of dynamic transcription factors.
    Oh KS; Ha J; Baek S; Sung MH
    Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genome-wide footprinting: ready for prime time?
    Sung MH; Baek S; Hager GL
    Nat Methods; 2016 Mar; 13(3):222-228. PubMed ID: 26914206
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genomic methods in profiling DNA accessibility and factor localization.
    Klein DC; Hainer SJ
    Chromosome Res; 2020 Mar; 28(1):69-85. PubMed ID: 31776829
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Quantitative analysis of genome-wide chromatin remodeling.
    Baek S; Sung MH; Hager GL
    Methods Mol Biol; 2012; 833():433-41. PubMed ID: 22183609
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks.
    Moyano TC; Gutiérrez RA; Alvarez JM
    Methods Mol Biol; 2021; 2328():25-46. PubMed ID: 34251618
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Analysis of computational footprinting methods for DNase sequencing experiments.
    Gusmao EG; Allhoff M; Zenke M; Costa IG
    Nat Methods; 2016 Apr; 13(4):303-9. PubMed ID: 26901649
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
    Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
    J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.
    Mei S; Qin Q; Wu Q; Sun H; Zheng R; Zang C; Zhu M; Wu J; Shi X; Taing L; Liu T; Brown M; Meyer CA; Liu XS
    Nucleic Acids Res; 2017 Jan; 45(D1):D658-D662. PubMed ID: 27789702
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis.
    Li Y; Liu Y; Yang H; Zhang T; Naruse K; Tu Q
    Genome Res; 2020 Jun; 30(6):924-937. PubMed ID: 32591361
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ATAC2GRN: optimized ATAC-seq and DNase1-seq pipelines for rapid and accurate genome regulatory network inference.
    Pranzatelli TJF; Michael DG; Chiorini JA
    BMC Genomics; 2018 Jul; 19(1):563. PubMed ID: 30064353
    [TBL] [Abstract][Full Text] [Related]  

  • 12. NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data.
    Vainshtein Y; Rippe K; Teif VB
    BMC Genomics; 2017 Feb; 18(1):158. PubMed ID: 28196481
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.
    Kähärä J; Lähdesmäki H
    Bioinformatics; 2015 Sep; 31(17):2852-9. PubMed ID: 25957350
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genome-Wide Analysis of Chromatin Accessibility in Arabidopsis Infected with Pseudomonas syringae.
    Bordiya Y; Kang HG
    Methods Mol Biol; 2017; 1578():263-272. PubMed ID: 28220432
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Profiling Open Chromatin Structure in the Ovarian Somatic Cells Using ATAC-seq.
    Murano K; Iwasaki YW; Siomi H
    Methods Mol Biol; 2018; 1680():165-177. PubMed ID: 29030848
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Measuring Chromatin Accessibility: ATAC-Seq.
    Sahu SK; Basu A; Tiwari VK
    Methods Mol Biol; 2021; 2351():105-121. PubMed ID: 34382186
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Most brain disease-associated and eQTL haplotypes are not located within transcription factor DNase-seq footprints in brain.
    Handel AE; Gallone G; Zameel Cader M; Ponting CP
    Hum Mol Genet; 2017 Jan; 26(1):79-89. PubMed ID: 27798116
    [TBL] [Abstract][Full Text] [Related]  

  • 18. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.
    Mendoza-Parra MA; Saleem MA; Blum M; Cholley PE; Gronemeyer H
    Methods Mol Biol; 2016; 1418():243-65. PubMed ID: 27008019
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling.
    Karabacak Calviello A; Hirsekorn A; Wurmus R; Yusuf D; Ohler U
    Genome Biol; 2019 Feb; 20(1):42. PubMed ID: 30791920
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.
    Juric I; Yu M; Abnousi A; Raviram R; Fang R; Zhao Y; Zhang Y; Qiu Y; Yang Y; Li Y; Ren B; Hu M
    PLoS Comput Biol; 2019 Apr; 15(4):e1006982. PubMed ID: 30986246
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 38.