924 related articles for article (PubMed ID: 27018577)
1. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Van Nostrand EL; Pratt GA; Shishkin AA; Gelboin-Burkhart C; Fang MY; Sundararaman B; Blue SM; Nguyen TB; Surka C; Elkins K; Stanton R; Rigo F; Guttman M; Yeo GW
Nat Methods; 2016 Jun; 13(6):508-14. PubMed ID: 27018577
[TBL] [Abstract][Full Text] [Related]
2. Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Van Nostrand EL; Pratt GA; Yee BA; Wheeler EC; Blue SM; Mueller J; Park SS; Garcia KE; Gelboin-Burkhart C; Nguyen TB; Rabano I; Stanton R; Sundararaman B; Wang R; Fu XD; Graveley BR; Yeo GW
Genome Biol; 2020 Apr; 21(1):90. PubMed ID: 32252787
[TBL] [Abstract][Full Text] [Related]
3. Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP.
Lorenz DA; Her HL; Shen KA; Rothamel K; Hutt KR; Nojadera AC; Bruns SC; Manakov SA; Yee BA; Chapman KB; Yeo GW
Nat Methods; 2023 Jan; 20(1):65-69. PubMed ID: 36550273
[TBL] [Abstract][Full Text] [Related]
4. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
Benhalevy D; McFarland HL; Sarshad AA; Hafner M
Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
[TBL] [Abstract][Full Text] [Related]
5. Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq.
Blue SM; Yee BA; Pratt GA; Mueller JR; Park SS; Shishkin AA; Starner AC; Van Nostrand EL; Yeo GW
Nat Protoc; 2022 May; 17(5):1223-1265. PubMed ID: 35322209
[TBL] [Abstract][Full Text] [Related]
6. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
[TBL] [Abstract][Full Text] [Related]
7. Footprinting SHAPE-eCLIP Reveals Transcriptome-wide Hydrogen Bonds at RNA-Protein Interfaces.
Corley M; Flynn RA; Lee B; Blue SM; Chang HY; Yeo GW
Mol Cell; 2020 Dec; 80(5):903-914.e8. PubMed ID: 33242392
[TBL] [Abstract][Full Text] [Related]
8. Mapping protein-RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2).
Lewinski M; Brüggemann M; Köster T; Reichel M; Bergelt T; Meyer K; König J; Zarnack K; Staiger D
Nat Protoc; 2024 Apr; 19(4):1183-1234. PubMed ID: 38278964
[TBL] [Abstract][Full Text] [Related]
9. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis.
Moore MJ; Zhang C; Gantman EC; Mele A; Darnell JC; Darnell RB
Nat Protoc; 2014 Feb; 9(2):263-93. PubMed ID: 24407355
[TBL] [Abstract][Full Text] [Related]
10. Insight into novel RNA-binding activities via large-scale analysis of lncRNA-bound proteome and IDH1-bound transcriptome.
Liu L; Li T; Song G; He Q; Yin Y; Lu JY; Bi X; Wang K; Luo S; Chen YS; Yang Y; Sun BF; Yang YG; Wu J; Zhu H; Shen X
Nucleic Acids Res; 2019 Mar; 47(5):2244-2262. PubMed ID: 30698743
[TBL] [Abstract][Full Text] [Related]
11. Deconvolution of in vivo protein-RNA contacts using fractionated eCLIP-seq.
Biancon G; Busarello E; Joshi P; Lesch BJ; Halene S; Tebaldi T
STAR Protoc; 2022 Dec; 3(4):101823. PubMed ID: 36595959
[TBL] [Abstract][Full Text] [Related]
12. Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes.
Brannan KW; Chaim IA; Marina RJ; Yee BA; Kofman ER; Lorenz DA; Jagannatha P; Dong KD; Madrigal AA; Underwood JG; Yeo GW
Nat Methods; 2021 May; 18(5):507-519. PubMed ID: 33963355
[TBL] [Abstract][Full Text] [Related]
13. Optimized infrared photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (IR-PAR-CLIP) protocol identifies novel IGF2BP3-interacting RNAs in colon cancer cells.
Anisimova AS; Karagöz GE
RNA; 2023 Nov; 29(11):1818-1836. PubMed ID: 37582618
[TBL] [Abstract][Full Text] [Related]
14. RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes.
Singh G; Ricci EP; Moore MJ
Methods; 2014 Feb; 65(3):320-32. PubMed ID: 24096052
[TBL] [Abstract][Full Text] [Related]
15. Protocol for detecting RBM33-binding sites in HEK293T cells using PAR-CLIP-seq.
Yu F; Liu S; Zhu AC; He C; Qian Z
STAR Protoc; 2024 Mar; 5(1):102855. PubMed ID: 38300798
[TBL] [Abstract][Full Text] [Related]
16. Advantages and limitations of UV cross-linking analysis of protein-RNA interactomes in microbes.
Esteban-Serna S; McCaughan H; Granneman S
Mol Microbiol; 2023 Oct; 120(4):477-489. PubMed ID: 37165708
[TBL] [Abstract][Full Text] [Related]
17. Galaxy CLIP-Explorer: a web server for CLIP-Seq data analysis.
Heyl F; Maticzka D; Uhl M; Backofen R
Gigascience; 2020 Nov; 9(11):. PubMed ID: 33179042
[TBL] [Abstract][Full Text] [Related]
18. uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins.
Maticzka D; Ilik IA; Aktas T; Backofen R; Akhtar A
Nat Commun; 2018 Mar; 9(1):1142. PubMed ID: 29559621
[TBL] [Abstract][Full Text] [Related]
19. Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions.
Van Nostrand EL; Shishkin AA; Pratt GA; Nguyen TB; Yeo GW
Methods; 2017 Aug; 126():29-37. PubMed ID: 28790018
[TBL] [Abstract][Full Text] [Related]
20. CLIP-related methodologies and their application to retrovirology.
Bieniasz PD; Kutluay SB
Retrovirology; 2018 May; 15(1):35. PubMed ID: 29716635
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
