257 related articles for article (PubMed ID: 27023428)
1. Amplification, Next-generation Sequencing, and Genomic DNA Mapping of Retroviral Integration Sites.
Serrao E; Cherepanov P; Engelman AN
J Vis Exp; 2016 Mar; (109):. PubMed ID: 27023428
[TBL] [Abstract][Full Text] [Related]
2. A high-throughput method for cloning and sequencing human immunodeficiency virus type 1 integration sites.
Kim S; Kim Y; Liang T; Sinsheimer JS; Chow SA
J Virol; 2006 Nov; 80(22):11313-21. PubMed ID: 16971446
[TBL] [Abstract][Full Text] [Related]
3. An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses.
Wells DW; Guo S; Shao W; Bale MJ; Coffin JM; Hughes SH; Wu X
BMC Genomics; 2020 Mar; 21(1):216. PubMed ID: 32151239
[TBL] [Abstract][Full Text] [Related]
4. Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA.
Boltz VF; Rausch J; Shao W; Hattori J; Luke B; Maldarelli F; Mellors JW; Kearney MF; Coffin JM
Retrovirology; 2016 Dec; 13(1):87. PubMed ID: 27998286
[TBL] [Abstract][Full Text] [Related]
5. Identifying integration sites of the HIV-1 genome with intact and aberrant ends through deep sequencing.
Ode H; Kobayashi A; Matsuda M; Hachiya A; Imahashi M; Yokomaku Y; Iwatani Y
J Virol Methods; 2019 May; 267():59-65. PubMed ID: 30857886
[TBL] [Abstract][Full Text] [Related]
6. VISA--Vector Integration Site Analysis server: a web-based server to rapidly identify retroviral integration sites from next-generation sequencing.
Hocum JD; Battrell LR; Maynard R; Adair JE; Beard BC; Rawlings DJ; Kiem HP; Miller DG; Trobridge GD
BMC Bioinformatics; 2015 Jul; 16(1):212. PubMed ID: 26150117
[TBL] [Abstract][Full Text] [Related]
7. High-resolution insertion-site analysis by linear amplification-mediated PCR (LAM-PCR).
Schmidt M; Schwarzwaelder K; Bartholomae C; Zaoui K; Ball C; Pilz I; Braun S; Glimm H; von Kalle C
Nat Methods; 2007 Dec; 4(12):1051-7. PubMed ID: 18049469
[TBL] [Abstract][Full Text] [Related]
8. Nanopore sequencing as a scalable, cost-effective platform for analyzing polyclonal vector integration sites following clinical T cell therapy.
Zhang P; Ganesamoorthy D; Nguyen SH; Au R; Coin LJ; Tey SK
J Immunother Cancer; 2020 Jun; 8(1):. PubMed ID: 32527930
[TBL] [Abstract][Full Text] [Related]
9. Digital Restriction Enzyme Analysis of Methylation (DREAM).
Jelinek J; Lee JT; Cesaroni M; Madzo J; Liang S; Lu Y; Issa JJ
Methods Mol Biol; 2018; 1708():247-265. PubMed ID: 29224148
[TBL] [Abstract][Full Text] [Related]
10. Sites of retroviral DNA integration: From basic research to clinical applications.
Serrao E; Engelman AN
Crit Rev Biochem Mol Biol; 2016; 51(1):26-42. PubMed ID: 26508664
[TBL] [Abstract][Full Text] [Related]
11. An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome.
O'Malley RC; Alonso JM; Kim CJ; Leisse TJ; Ecker JR
Nat Protoc; 2007; 2(11):2910-7. PubMed ID: 18007627
[TBL] [Abstract][Full Text] [Related]
12. Application of targeted enrichment to next-generation sequencing of retroviruses integrated into the host human genome.
Miyazato P; Katsuya H; Fukuda A; Uchiyama Y; Matsuo M; Tokunaga M; Hino S; Nakao M; Satou Y
Sci Rep; 2016 Jun; 6():28324. PubMed ID: 27321866
[TBL] [Abstract][Full Text] [Related]
13. Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.
Zhou S; Jones C; Mieczkowski P; Swanstrom R
J Virol; 2015 Aug; 89(16):8540-55. PubMed ID: 26041299
[TBL] [Abstract][Full Text] [Related]
14. A genome-wide analysis of lentivector integration sites using targeted sequence capture and next generation sequencing technology.
Ustek D; Sirma S; Gumus E; Arikan M; Cakiris A; Abaci N; Mathew J; Emrence Z; Azakli H; Cosan F; Cakar A; Parlak M; Kursun O
Infect Genet Evol; 2012 Oct; 12(7):1349-54. PubMed ID: 22613802
[TBL] [Abstract][Full Text] [Related]
15. Detection and direct genomic sequencing of multiple rare unknown flanking DNA in highly complex samples.
Schmidt M; Hoffmann G; Wissler M; Lemke N; Müssig A; Glimm H; Williams DA; Ragg S; Hesemann CU; von Kalle C
Hum Gene Ther; 2001 May; 12(7):743-9. PubMed ID: 11339891
[TBL] [Abstract][Full Text] [Related]
16. Isolation and analysis of retroviral integration targets by solo long terminal repeat inverse PCR.
Jin YF; Ishibashi T; Nomoto A; Masuda M
J Virol; 2002 Jun; 76(11):5540-7. PubMed ID: 11991982
[TBL] [Abstract][Full Text] [Related]
17. Mapping of a mouse mammary tumor virus integration site by retroviral LTR--arbitrary polymerase chain reaction.
Casper C; Leib-Mösch C; Salmons B; Günzburg WH; Baumann G; Höfler H; Erfle V; Atkinson MJ
Virus Res; 1998 Apr; 54(2):207-15. PubMed ID: 9696128
[TBL] [Abstract][Full Text] [Related]
18. Molecular indications for in vivo integration of the avian leukosis virus, subgroup J-long terminal repeat into the Marek's disease virus in experimentally dually-infected chickens.
Davidson I; Borenshtain R; Kung HJ; Witter RL
Virus Genes; 2002 Mar; 24(2):173-80. PubMed ID: 12018709
[TBL] [Abstract][Full Text] [Related]
19. Identification of HIV integration sites in infected host genomic DNA.
Ciuffi A; Barr SD
Methods; 2011 Jan; 53(1):39-46. PubMed ID: 20385239
[TBL] [Abstract][Full Text] [Related]
20. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay.
Sunshine S; Kirchner R; Amr SS; Mansur L; Shakhbatyan R; Kim M; Bosque A; Siliciano RF; Planelles V; Hofmann O; Ho Sui S; Li JZ
J Virol; 2016 May; 90(9):4511-4519. PubMed ID: 26912621
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
