These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 27028235)

  • 1. Probing RNA Native Conformational Ensembles with Structural Constraints.
    Fonseca R; van den Bedem H; Bernauer J
    J Comput Biol; 2016 May; 23(5):362-71. PubMed ID: 27028235
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fast, clash-free RNA conformational morphing using molecular junctions.
    Héliou A; Budday D; Fonseca R; van den Bedem H
    Bioinformatics; 2017 Jul; 33(14):2114-2122. PubMed ID: 28334257
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Characterizing RNA ensembles from NMR data with kinematic models.
    Fonseca R; Pachov DV; Bernauer J; van den Bedem H
    Nucleic Acids Res; 2014 Sep; 42(15):9562-72. PubMed ID: 25114056
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Mapping the landscape of RNA dynamics with NMR spectroscopy.
    Rinnenthal J; Buck J; Ferner J; Wacker A; Fürtig B; Schwalbe H
    Acc Chem Res; 2011 Dec; 44(12):1292-301. PubMed ID: 21894962
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Unveiling Inherent Degeneracies in Determining Population-Weighted Ensembles of Interdomain Orientational Distributions Using NMR Residual Dipolar Couplings: Application to RNA Helix Junction Helix Motifs.
    Yang S; Al-Hashimi HM
    J Phys Chem B; 2015 Jul; 119(30):9614-26. PubMed ID: 26131693
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparative Visualization of the RNA Suboptimal Conformational Ensemble In Vivo.
    Woods CT; Lackey L; Williams B; Dokholyan NV; Gotz D; Laederach A
    Biophys J; 2017 Jul; 113(2):290-301. PubMed ID: 28625696
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Conformation spaces of proteins.
    Sullivan DC; Kuntz ID
    Proteins; 2001 Mar; 42(4):495-511. PubMed ID: 11170204
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparing atomistic simulation data with the NMR experiment: how much can NOEs actually tell us?
    Zagrovic B; van Gunsteren WF
    Proteins; 2006 Apr; 63(1):210-8. PubMed ID: 16425239
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RNA folding pathways in stop motion.
    Bottaro S; Gil-Ley A; Bussi G
    Nucleic Acids Res; 2016 Jul; 44(12):5883-91. PubMed ID: 27091499
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Probing RNA conformational dynamics and heterogeneity using femtosecond time-resolved fluorescence spectroscopy.
    Zhao L; Xia T
    Methods; 2009 Oct; 49(2):128-35. PubMed ID: 19362148
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations.
    Bottaro S; Bussi G; Kennedy SD; Turner DH; Lindorff-Larsen K
    Sci Adv; 2018 May; 4(5):eaar8521. PubMed ID: 29795785
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Solid-State NMR Spectroscopy of RNA.
    Marchanka A; Carlomagno T
    Methods Enzymol; 2019; 615():333-371. PubMed ID: 30638533
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Protein conformational populations and functionally relevant substates.
    Ramanathan A; Savol A; Burger V; Chennubhotla CS; Agarwal PK
    Acc Chem Res; 2014 Jan; 47(1):149-56. PubMed ID: 23988159
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Conformational ensembles of an RNA hairpin using molecular dynamics and sparse NMR data.
    Reißer S; Zucchelli S; Gustincich S; Bussi G
    Nucleic Acids Res; 2020 Feb; 48(3):1164-1174. PubMed ID: 31889193
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Dynamics of an adenine-adenine RNA conformational switch from discrete path sampling.
    Chakraborty D; Wales DJ
    J Chem Phys; 2019 Mar; 150(12):125101. PubMed ID: 30927889
    [TBL] [Abstract][Full Text] [Related]  

  • 16. From static to dynamic: the need for structural ensembles and a predictive model of RNA folding and function.
    Herschlag D; Allred BE; Gowrishankar S
    Curr Opin Struct Biol; 2015 Feb; 30():125-133. PubMed ID: 25744941
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Equilibrium conformational dynamics in an RNA tetraloop from massively parallel molecular dynamics.
    DePaul AJ; Thompson EJ; Patel SS; Haldeman K; Sorin EJ
    Nucleic Acids Res; 2010 Aug; 38(14):4856-67. PubMed ID: 20223768
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Enhanced conformational sampling method for proteins based on the TaBoo SeArch algorithm: application to the folding of a mini-protein, chignolin.
    Harada R; Takano Y; Shigeta Y
    J Comput Chem; 2015 Apr; 36(10):763-72. PubMed ID: 25691321
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Polarizable force field for RNA based on the classical drude oscillator.
    Lemkul JA; MacKerell AD
    J Comput Chem; 2018 Dec; 39(32):2624-2646. PubMed ID: 30515902
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Integrating molecular dynamics simulations with chemical probing experiments using SHAPE-FIT.
    Kirmizialtin S; Hennelly SP; Schug A; Onuchic JN; Sanbonmatsu KY
    Methods Enzymol; 2015; 553():215-34. PubMed ID: 25726467
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.