These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. Precision design of stable genetic circuits carried in highly-insulated E. coli genomic landing pads. Park Y; Espah Borujeni A; Gorochowski TE; Shin J; Voigt CA Mol Syst Biol; 2020 Aug; 16(8):e9584. PubMed ID: 32812710 [TBL] [Abstract][Full Text] [Related]
6. GeNeDA: An Open-Source Workflow for Design Automation of Gene Regulatory Networks Inspired from Microelectronics. Madec M; Pecheux F; Gendrault Y; Rosati E; Lallement C; Haiech J J Comput Biol; 2016 Oct; 23(10):841-55. PubMed ID: 27322846 [TBL] [Abstract][Full Text] [Related]
7. Genetic programs constructed from layered logic gates in single cells. Moon TS; Lou C; Tamsir A; Stanton BC; Voigt CA Nature; 2012 Nov; 491(7423):249-53. PubMed ID: 23041931 [TBL] [Abstract][Full Text] [Related]
8. Optimal part and module selection for synthetic gene circuit design automation. Huynh L; Tagkopoulos I ACS Synth Biol; 2014 Aug; 3(8):556-64. PubMed ID: 24933033 [TBL] [Abstract][Full Text] [Related]
9. In silico implementation of synthetic gene networks. Marchisio MA Methods Mol Biol; 2012; 813():3-21. PubMed ID: 22083733 [TBL] [Abstract][Full Text] [Related]
10. Programming Escherichia coli to function as a digital display. Shin J; Zhang S; Der BS; Nielsen AA; Voigt CA Mol Syst Biol; 2020 Mar; 16(3):e9401. PubMed ID: 32141239 [TBL] [Abstract][Full Text] [Related]
11. An Automated Biomodel Selection System (BMSS) for Gene Circuit Designs. Yeoh JW; Ng KBI; Teh AY; Zhang J; Chee WKD; Poh CL ACS Synth Biol; 2019 Jul; 8(7):1484-1497. PubMed ID: 31035759 [TBL] [Abstract][Full Text] [Related]
12. AutoBioCAD: full biodesign automation of genetic circuits. Rodrigo G; Jaramillo A ACS Synth Biol; 2013 May; 2(5):230-6. PubMed ID: 23654253 [TBL] [Abstract][Full Text] [Related]
13. Sharing Structure and Function in Biological Design with SBOL 2.0. Roehner N; Beal J; Clancy K; Bartley B; Misirli G; Grünberg R; Oberortner E; Pocock M; Bissell M; Madsen C; Nguyen T; Zhang M; Zhang Z; Zundel Z; Densmore D; Gennari JH; Wipat A; Sauro HM; Myers CJ ACS Synth Biol; 2016 Jun; 5(6):498-506. PubMed ID: 27111421 [TBL] [Abstract][Full Text] [Related]
14. iBioSim 3: A Tool for Model-Based Genetic Circuit Design. Watanabe L; Nguyen T; Zhang M; Zundel Z; Zhang Z; Madsen C; Roehner N; Myers C ACS Synth Biol; 2019 Jul; 8(7):1560-1563. PubMed ID: 29944839 [TBL] [Abstract][Full Text] [Related]