825 related articles for article (PubMed ID: 27053337)
1. Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.
Taberlay PC; Achinger-Kawecka J; Lun AT; Buske FA; Sabir K; Gould CM; Zotenko E; Bert SA; Giles KA; Bauer DC; Smyth GK; Stirzaker C; O'Donoghue SI; Clark SJ
Genome Res; 2016 Jun; 26(6):719-31. PubMed ID: 27053337
[TBL] [Abstract][Full Text] [Related]
2. Alterations in Three-Dimensional Organization of the Cancer Genome and Epigenome.
Achinger-Kawecka J; Taberlay PC; Clark SJ
Cold Spring Harb Symp Quant Biol; 2016; 81():41-51. PubMed ID: 28424341
[TBL] [Abstract][Full Text] [Related]
3. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
[TBL] [Abstract][Full Text] [Related]
4. Three-dimensional genome landscape comprehensively reveals patterns of spatial gene regulation in papillary and anaplastic thyroid cancers: a study using representative cell lines for each cancer type.
Zhang L; Xu M; Zhang W; Zhu C; Cui Z; Fu H; Ma Y; Huang S; Cui J; Liang S; Huang L; Wang H
Cell Mol Biol Lett; 2023 Jan; 28(1):1. PubMed ID: 36609218
[TBL] [Abstract][Full Text] [Related]
5. Disruption of the 3D cancer genome blueprint.
Achinger-Kawecka J; Clark SJ
Epigenomics; 2017 Jan; 9(1):47-55. PubMed ID: 27936932
[TBL] [Abstract][Full Text] [Related]
6. 3D disorganization and rearrangement of genome provide insights into pathogenesis of NAFLD by integrated Hi-C, Nanopore, and RNA sequencing.
Xu L; Yin L; Qi Y; Tan X; Gao M; Peng J
Acta Pharm Sin B; 2021 Oct; 11(10):3150-3164. PubMed ID: 34729306
[TBL] [Abstract][Full Text] [Related]
7. Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells.
Glinsky GV
Chromosome Res; 2018 Mar; 26(1-2):61-84. PubMed ID: 29335803
[TBL] [Abstract][Full Text] [Related]
8. Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus.
Smith EM; Lajoie BR; Jain G; Dekker J
Am J Hum Genet; 2016 Jan; 98(1):185-201. PubMed ID: 26748519
[TBL] [Abstract][Full Text] [Related]
9. Local compartment changes and regulatory landscape alterations in histone H1-depleted cells.
Geeven G; Zhu Y; Kim BJ; Bartholdy BA; Yang SM; Macfarlan TS; Gifford WD; Pfaff SL; Verstegen MJ; Pinto H; Vermunt MW; Creyghton MP; Wijchers PJ; Stamatoyannopoulos JA; Skoultchi AI; de Laat W
Genome Biol; 2015 Dec; 16():289. PubMed ID: 26700097
[TBL] [Abstract][Full Text] [Related]
10. Structural heterogeneity and functional diversity of topologically associating domains in mammalian genomes.
Wang XT; Dong PF; Zhang HY; Peng C
Nucleic Acids Res; 2015 Sep; 43(15):7237-46. PubMed ID: 26150425
[TBL] [Abstract][Full Text] [Related]
11. 3D genome of multiple myeloma reveals spatial genome disorganization associated with copy number variations.
Wu P; Li T; Li R; Jia L; Zhu P; Liu Y; Chen Q; Tang D; Yu Y; Li C
Nat Commun; 2017 Dec; 8(1):1937. PubMed ID: 29203764
[TBL] [Abstract][Full Text] [Related]
12. ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.
Hon G; Ren B; Wang W
PLoS Comput Biol; 2008 Oct; 4(10):e1000201. PubMed ID: 18927605
[TBL] [Abstract][Full Text] [Related]
13. Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions.
Nurick I; Shamir R; Elkon R
Epigenetics Chromatin; 2018 Aug; 11(1):49. PubMed ID: 30157915
[TBL] [Abstract][Full Text] [Related]
14. InTAD: chromosome conformation guided analysis of enhancer target genes.
Okonechnikov K; Erkek S; Korbel JO; Pfister SM; Chavez L
BMC Bioinformatics; 2019 Jan; 20(1):60. PubMed ID: 30704404
[TBL] [Abstract][Full Text] [Related]
15. The effects of common structural variants on 3D chromatin structure.
Shanta O; Noor A; ; Sebat J
BMC Genomics; 2020 Jan; 21(1):95. PubMed ID: 32000688
[TBL] [Abstract][Full Text] [Related]
16. Practical Analysis of Genome Contact Interaction Experiments.
Carty MA; Elemento O
Methods Mol Biol; 2016; 1418():177-89. PubMed ID: 27008015
[TBL] [Abstract][Full Text] [Related]
17. Genetic sequence-based prediction of long-range chromatin interactions suggests a potential role of short tandem repeat sequences in genome organization.
Nikumbh S; Pfeifer N
BMC Bioinformatics; 2017 Apr; 18(1):218. PubMed ID: 28420341
[TBL] [Abstract][Full Text] [Related]
18. Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
Ulianov SV; Khrameeva EE; Gavrilov AA; Flyamer IM; Kos P; Mikhaleva EA; Penin AA; Logacheva MD; Imakaev MV; Chertovich A; Gelfand MS; Shevelyov YY; Razin SV
Genome Res; 2016 Jan; 26(1):70-84. PubMed ID: 26518482
[TBL] [Abstract][Full Text] [Related]
19. Evolutionary stability of topologically associating domains is associated with conserved gene regulation.
Krefting J; Andrade-Navarro MA; Ibn-Salem J
BMC Biol; 2018 Aug; 16(1):87. PubMed ID: 30086749
[TBL] [Abstract][Full Text] [Related]
20. Making Sense of the Tangle: Insights into Chromatin Folding and Gene Regulation.
Chung IM; Ketharnathan S; Kim SH; Thiruvengadam M; Rani MK; Rajakumar G
Genes (Basel); 2016 Sep; 7(10):. PubMed ID: 27669308
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
