191 related articles for article (PubMed ID: 27068484)
1. XLSearch: a Probabilistic Database Search Algorithm for Identifying Cross-Linked Peptides.
Ji C; Li S; Reilly JP; Radivojac P; Tang H
J Proteome Res; 2016 Jun; 15(6):1830-41. PubMed ID: 27068484
[TBL] [Abstract][Full Text] [Related]
2. Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity.
Yu F; Li N; Yu W
J Proteome Res; 2017 Oct; 16(10):3942-3952. PubMed ID: 28825304
[TBL] [Abstract][Full Text] [Related]
3. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra.
Chen Y; Kwon SW; Kim SC; Zhao Y
J Proteome Res; 2005; 4(3):998-1005. PubMed ID: 15952748
[TBL] [Abstract][Full Text] [Related]
4. MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines.
Kwon T; Choi H; Vogel C; Nesvizhskii AI; Marcotte EM
J Proteome Res; 2011 Jul; 10(7):2949-58. PubMed ID: 21488652
[TBL] [Abstract][Full Text] [Related]
5. Empirical multidimensional space for scoring peptide spectrum matches in shotgun proteomics.
Ivanov MV; Levitsky LI; Lobas AA; Panic T; Laskay ÜA; Mitulovic G; Schmid R; Pridatchenko ML; Tsybin YO; Gorshkov MV
J Proteome Res; 2014 Apr; 13(4):1911-20. PubMed ID: 24571493
[TBL] [Abstract][Full Text] [Related]
6. An algorithm for decoy-free false discovery rate estimation in XL-MS/MS proteomics.
Peng Y; Jain S; Radivojac P
Bioinformatics; 2024 Jun; 40(Supplement_1):i428-i436. PubMed ID: 38940171
[TBL] [Abstract][Full Text] [Related]
7. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
[TBL] [Abstract][Full Text] [Related]
8. Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases.
Sadygov RG; Liu H; Yates JR
Anal Chem; 2004 Mar; 76(6):1664-71. PubMed ID: 15018565
[TBL] [Abstract][Full Text] [Related]
9. Support vector machines for improved peptide identification from tandem mass spectrometry database search.
Webb-Robertson BJ
Methods Mol Biol; 2009; 492():453-60. PubMed ID: 19241051
[TBL] [Abstract][Full Text] [Related]
10. MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm.
Cerqueira FR; Ricardo AM; de Paiva Oliveira A; Graber A; Baumgartner C
BMC Bioinformatics; 2016 Dec; 17(Suppl 18):472. PubMed ID: 28105913
[TBL] [Abstract][Full Text] [Related]
11. Improving X!Tandem on peptide identification from mass spectrometry by self-boosted Percolator.
Yang P; Ma J; Wang P; Zhu Y; Zhou BB; Yang YH
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(5):1273-80. PubMed ID: 22689082
[TBL] [Abstract][Full Text] [Related]
12. Kojak: efficient analysis of chemically cross-linked protein complexes.
Hoopmann MR; Zelter A; Johnson RS; Riffle M; MacCoss MJ; Davis TN; Moritz RL
J Proteome Res; 2015 May; 14(5):2190-8. PubMed ID: 25812159
[TBL] [Abstract][Full Text] [Related]
13. The generating function approach for Peptide identification in spectral networks.
Guthals A; Boucher C; Bandeira N
J Comput Biol; 2015 May; 22(5):353-66. PubMed ID: 25423621
[TBL] [Abstract][Full Text] [Related]
14. Application of a fast sorting algorithm to the assignment of mass spectrometric cross-linking data.
Petrotchenko EV; Borchers CH
Proteomics; 2014 Sep; 14(17-18):1987-9. PubMed ID: 24895266
[TBL] [Abstract][Full Text] [Related]
15. An SVM scorer for more sensitive and reliable peptide identification via tandem mass spectrometry.
Wang H; Fu Y; Sun R; He S; Zeng R; Gao W
Pac Symp Biocomput; 2006; ():303-14. PubMed ID: 17094248
[TBL] [Abstract][Full Text] [Related]
16. Score regularization for peptide identification.
He Z; Zhao H; Yu W
BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S2. PubMed ID: 21342549
[TBL] [Abstract][Full Text] [Related]
17. Instance based algorithm for posterior probability calculation by target-decoy strategy to improve protein identifications.
Jiang X; Dong X; Ye M; Zou H
Anal Chem; 2008 Dec; 80(23):9326-35. PubMed ID: 19551949
[TBL] [Abstract][Full Text] [Related]
18. Database search algorithm for identification of intact cross-links in proteins and peptides using tandem mass spectrometry.
Xu H; Hsu PH; Zhang L; Tsai MD; Freitas MA
J Proteome Res; 2010 Jul; 9(7):3384-93. PubMed ID: 20469931
[TBL] [Abstract][Full Text] [Related]
19. Matching cross-linked peptide spectra: only as good as the worse identification.
Trnka MJ; Baker PR; Robinson PJ; Burlingame AL; Chalkley RJ
Mol Cell Proteomics; 2014 Feb; 13(2):420-34. PubMed ID: 24335475
[TBL] [Abstract][Full Text] [Related]
20. Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets.
Spivak M; Weston J; Bottou L; Käll L; Noble WS
J Proteome Res; 2009 Jul; 8(7):3737-45. PubMed ID: 19385687
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
