335 related articles for article (PubMed ID: 27071107)
1. Dynamical network of residue-residue contacts reveals coupled allosteric effects in recognition, catalysis, and mutation.
Doshi U; Holliday MJ; Eisenmesser EZ; Hamelberg D
Proc Natl Acad Sci U S A; 2016 Apr; 113(17):4735-40. PubMed ID: 27071107
[TBL] [Abstract][Full Text] [Related]
2. Decoding Allosteric Communication Pathways in Cyclophilin A with a Comparative Analysis of Perturbed Conformational Ensembles.
Rodriguez-Bussey I; Yao XQ; Shouaib AD; Lopez J; Hamelberg D
J Phys Chem B; 2018 Jun; 122(25):6528-6535. PubMed ID: 29852734
[TBL] [Abstract][Full Text] [Related]
3. Intrinsic dynamics of an enzyme underlies catalysis.
Eisenmesser EZ; Millet O; Labeikovsky W; Korzhnev DM; Wolf-Watz M; Bosco DA; Skalicky JJ; Kay LE; Kern D
Nature; 2005 Nov; 438(7064):117-21. PubMed ID: 16267559
[TBL] [Abstract][Full Text] [Related]
4. Networks of Dynamic Allostery Regulate Enzyme Function.
Holliday MJ; Camilloni C; Armstrong GS; Vendruscolo M; Eisenmesser EZ
Structure; 2017 Feb; 25(2):276-286. PubMed ID: 28089447
[TBL] [Abstract][Full Text] [Related]
5. Dynamic allostery governs cyclophilin A-HIV capsid interplay.
Lu M; Hou G; Zhang H; Suiter CL; Ahn J; Byeon IJ; Perilla JR; Langmead CJ; Hung I; Gor'kov PL; Gan Z; Brey W; Aiken C; Zhang P; Schulten K; Gronenborn AM; Polenova T
Proc Natl Acad Sci U S A; 2015 Nov; 112(47):14617-22. PubMed ID: 26553990
[TBL] [Abstract][Full Text] [Related]
6. 1-(2,6-Dibenzyloxybenzoyl)-3-(9H-fluoren-9-yl)-urea: a novel cyclophilin A allosteric activator.
Lv M; Shi T; Mao X; Li X; Chen Y; Zhu J; Ni S; Shen X; Jiang H; Li J; Zhang J; Huang J
Biochem Biophys Res Commun; 2012 Sep; 425(4):938-43. PubMed ID: 22906739
[TBL] [Abstract][Full Text] [Related]
7. Conformational plasticity of an enzyme during catalysis: intricate coupling between cyclophilin A dynamics and substrate turnover.
McGowan LC; Hamelberg D
Biophys J; 2013 Jan; 104(1):216-26. PubMed ID: 23332074
[TBL] [Abstract][Full Text] [Related]
8. Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication.
Stetz G; Verkhivker GM
PLoS Comput Biol; 2017 Jan; 13(1):e1005299. PubMed ID: 28095400
[TBL] [Abstract][Full Text] [Related]
9. Conformational gating, dynamics and allostery in human monoacylglycerol lipase.
Tyukhtenko S; Ma X; Rajarshi G; Karageorgos I; Anderson KW; Hudgens JW; Guo JJ; Nasr ML; Zvonok N; Vemuri K; Wagner G; Makriyannis A
Sci Rep; 2020 Oct; 10(1):18531. PubMed ID: 33116203
[TBL] [Abstract][Full Text] [Related]
10. Catalysis of cis/trans isomerization in native HIV-1 capsid by human cyclophilin A.
Bosco DA; Eisenmesser EZ; Pochapsky S; Sundquist WI; Kern D
Proc Natl Acad Sci U S A; 2002 Apr; 99(8):5247-52. PubMed ID: 11929983
[TBL] [Abstract][Full Text] [Related]
11. Detecting Functional Dynamics in Proteins with Comparative Perturbed-Ensembles Analysis.
Yao XQ; Hamelberg D
Acc Chem Res; 2019 Dec; 52(12):3455-3464. PubMed ID: 31793290
[TBL] [Abstract][Full Text] [Related]
12. Exploring Molecular Mechanisms of Paradoxical Activation in the BRAF Kinase Dimers: Atomistic Simulations of Conformational Dynamics and Modeling of Allosteric Communication Networks and Signaling Pathways.
Tse A; Verkhivker GM
PLoS One; 2016; 11(11):e0166583. PubMed ID: 27861609
[TBL] [Abstract][Full Text] [Related]
13. Cis/trans isomerization in HIV-1 capsid protein catalyzed by cyclophilin A: insights from computational and theoretical studies.
Agarwal PK
Proteins; 2004 Aug; 56(3):449-63. PubMed ID: 15229879
[TBL] [Abstract][Full Text] [Related]
14. Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin.
Hacisuleyman A; Erman B
PLoS Comput Biol; 2017 Jan; 13(1):e1005319. PubMed ID: 28095404
[TBL] [Abstract][Full Text] [Related]
15. Protein dynamics and enzymatic catalysis: investigating the peptidyl-prolyl cis-trans isomerization activity of cyclophilin A.
Agarwal PK; Geist A; Gorin A
Biochemistry; 2004 Aug; 43(33):10605-18. PubMed ID: 15311922
[TBL] [Abstract][Full Text] [Related]
16. Rescue of conformational dynamics in enzyme catalysis by directed evolution.
Otten R; Liu L; Kenner LR; Clarkson MW; Mavor D; Tawfik DS; Kern D; Fraser JS
Nat Commun; 2018 Apr; 9(1):1314. PubMed ID: 29615624
[TBL] [Abstract][Full Text] [Related]
17. Enzyme dynamics during catalysis.
Eisenmesser EZ; Bosco DA; Akke M; Kern D
Science; 2002 Feb; 295(5559):1520-3. PubMed ID: 11859194
[TBL] [Abstract][Full Text] [Related]
18. Structural insights into the catalytic mechanism of cyclophilin A.
Howard BR; Vajdos FF; Li S; Sundquist WI; Hill CP
Nat Struct Biol; 2003 Jun; 10(6):475-81. PubMed ID: 12730686
[TBL] [Abstract][Full Text] [Related]
19. Enzyme dynamics during catalysis measured by NMR spectroscopy.
Kern D; Eisenmesser EZ; Wolf-Watz M
Methods Enzymol; 2005; 394():507-24. PubMed ID: 15808235
[TBL] [Abstract][Full Text] [Related]
20. Conserved Conformational Dynamics Reveal a Key Dynamic Residue in the Gatekeeper Loop of Human Cyclophilins.
Ahmed F; Yao XQ; Hamelberg D
J Phys Chem B; 2023 Apr; 127(14):3139-3150. PubMed ID: 36989346
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
