BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

809 related articles for article (PubMed ID: 27083325)

  • 1. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
    Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
    BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets.
    Pope BJ; Nguyen-Dumont T; Hammet F; Park DJ
    Source Code Biol Med; 2014 Jan; 9(1):3. PubMed ID: 24461215
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Blue: correcting sequencing errors using consensus and context.
    Greenfield P; Duesing K; Papanicolaou A; Bauer DC
    Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Edge effects in calling variants from targeted amplicon sequencing.
    Satya RV; DiCarlo J
    BMC Genomics; 2014 Dec; 15(1):1073. PubMed ID: 25480444
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark.
    Xiao A; Wu Z; Dong S
    BMC Bioinformatics; 2019 Feb; 20(1):76. PubMed ID: 30764760
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Calling known variants and identifying new variants while rapidly aligning sequence data.
    VanRaden PM; Bickhart DM; O'Connell JR
    J Dairy Sci; 2019 Apr; 102(4):3216-3229. PubMed ID: 30772032
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The impact of FASTQ and alignment read order on structural variant calling from long-read sequencing data.
    Lesack KJ; Wasmuth JD
    PeerJ; 2024; 12():e17101. PubMed ID: 38500526
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A high-plex PCR approach for massively parallel sequencing.
    Nguyen-Dumont T; Pope BJ; Hammet F; Southey MC; Park DJ
    Biotechniques; 2013 Aug; 55(2):69-74. PubMed ID: 23931594
    [TBL] [Abstract][Full Text] [Related]  

  • 9. On the critical evaluation and confirmation of germline sequence variants identified using massively parallel sequencing.
    Kubiritova Z; Gyuraszova M; Nagyova E; Hyblova M; Harsanyova M; Budis J; Hekel R; Gazdarica J; Duris F; Kadasi L; Szemes T; Radvanszky J
    J Biotechnol; 2019 Jun; 298():64-75. PubMed ID: 30998956
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BEETL-fastq: a searchable compressed archive for DNA reads.
    Janin L; Schulz-Trieglaff O; Cox AJ
    Bioinformatics; 2014 Oct; 30(19):2796-801. PubMed ID: 24950811
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Hi-Plex for Simple, Accurate, and Cost-Effective Amplicon-based Targeted DNA Sequencing.
    Pope BJ; Hammet F; Nguyen-Dumont T; Park DJ
    Methods Mol Biol; 2018; 1712():53-70. PubMed ID: 29224068
    [TBL] [Abstract][Full Text] [Related]  

  • 12. tarSVM: Improving the accuracy of variant calls derived from microfluidic PCR-based targeted next generation sequencing using a support vector machine.
    Gillies CE; Otto EA; Vega-Warner V; Robertson CC; Sanna-Cherchi S; Gharavi A; Crawford B; Bhimma R; Winkler C; ; ; Kang HM; Sampson MG
    BMC Bioinformatics; 2016 Jun; 17(1):233. PubMed ID: 27287006
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Mitigating the effects of reference sequence bias in single-multiplex massively parallel sequencing of the mitochondrial DNA control region.
    Huszar TI; Wetton JH; Jobling MA
    Forensic Sci Int Genet; 2019 May; 40():9-17. PubMed ID: 30682697
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.
    Ribeiro A; Golicz A; Hackett CA; Milne I; Stephen G; Marshall D; Flavell AJ; Bayer M
    BMC Bioinformatics; 2015 Nov; 16():382. PubMed ID: 26558718
    [TBL] [Abstract][Full Text] [Related]  

  • 15. KATK: Fast genotyping of rare variants directly from unmapped sequencing reads.
    Kaplinski L; Möls M; Puurand T; Pajuste FD; Remm M
    Hum Mutat; 2021 Jun; 42(6):777-786. PubMed ID: 33715282
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Fully automated pipeline for detection of sex linked genes using RNA-Seq data.
    Michalovova M; Kubat Z; Hobza R; Vyskot B; Kejnovsky E
    BMC Bioinformatics; 2015 Mar; 16(1):78. PubMed ID: 25884927
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Challenges in exome analysis by LifeScope and its alternative computational pipelines.
    Pranckevičiene E; Rančelis T; Pranculis A; Kučinskas V
    BMC Res Notes; 2015 Sep; 8():421. PubMed ID: 26346699
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Halvade somatic: Somatic variant calling with Apache Spark.
    Decap D; de Schaetzen van Brienen L; Larmuseau M; Costanza P; Herzeel C; Wuyts R; Marchal K; Fostier J
    Gigascience; 2022 Jan; 11(1):. PubMed ID: 35022699
    [TBL] [Abstract][Full Text] [Related]  

  • 19. VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering.
    Verbist BM; Thys K; Reumers J; Wetzels Y; Van der Borght K; Talloen W; Aerssens J; Clement L; Thas O
    Bioinformatics; 2015 Jan; 31(1):94-101. PubMed ID: 25178459
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets.
    Samadian S; Bruce JP; Pugh TJ
    PLoS Comput Biol; 2018 Mar; 14(3):e1006080. PubMed ID: 29590101
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 41.