These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
128 related articles for article (PubMed ID: 27094282)
21. Localization of ligand binding site in proteins identified in silico. Brylinski M; Kochanczyk M; Broniatowska E; Roterman I J Mol Model; 2007 Jul; 13(6-7):665-75. PubMed ID: 17394030 [TBL] [Abstract][Full Text] [Related]
22. MIB: Metal Ion-Binding Site Prediction and Docking Server. Lin YF; Cheng CW; Shih CS; Hwang JK; Yu CS; Lu CH J Chem Inf Model; 2016 Dec; 56(12):2287-2291. PubMed ID: 27976886 [TBL] [Abstract][Full Text] [Related]
23. Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information. Wang K; Horst JA; Cheng G; Nickle DC; Samudrala R PLoS Comput Biol; 2008 Sep; 4(9):e1000181. PubMed ID: 18818722 [TBL] [Abstract][Full Text] [Related]
24. MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm. Chang DT; Oyang YJ; Lin JH Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W233-8. PubMed ID: 15991337 [TBL] [Abstract][Full Text] [Related]
25. In silico protein motif discovery and structural analysis. Mooney C; Davey N; Martin AJ; Walsh I; Shields DC; Pollastri G Methods Mol Biol; 2011; 760():341-53. PubMed ID: 21780007 [TBL] [Abstract][Full Text] [Related]
27. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. Najmanovich R; Kurbatova N; Thornton J Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810 [TBL] [Abstract][Full Text] [Related]
28. SITEHOUND-web: a server for ligand binding site identification in protein structures. Hernandez M; Ghersi D; Sanchez R Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W413-6. PubMed ID: 19398430 [TBL] [Abstract][Full Text] [Related]
29. CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure. Janda JO; Busch M; Kück F; Porfenenko M; Merkl R BMC Bioinformatics; 2012 Apr; 13():55. PubMed ID: 22480135 [TBL] [Abstract][Full Text] [Related]
30. Identification of similar regions of protein structures using integrated sequence and structure analysis tools. Peters B; Moad C; Youn E; Buffington K; Heiland R; Mooney S BMC Struct Biol; 2006 Mar; 6():4. PubMed ID: 16526955 [TBL] [Abstract][Full Text] [Related]
31. DoGSiteScorer: a web server for automatic binding site prediction, analysis and druggability assessment. Volkamer A; Kuhn D; Rippmann F; Rarey M Bioinformatics; 2012 Aug; 28(15):2074-5. PubMed ID: 22628523 [TBL] [Abstract][Full Text] [Related]
32. eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape. Kinoshita K; Murakami Y; Nakamura H Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W398-402. PubMed ID: 17567616 [TBL] [Abstract][Full Text] [Related]
33. Protein-binding site prediction based on three-dimensional protein modeling. Oh M; Joo K; Lee J Proteins; 2009; 77 Suppl 9():152-6. PubMed ID: 19768678 [TBL] [Abstract][Full Text] [Related]
34. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites. Laurie AT; Jackson RM Bioinformatics; 2005 May; 21(9):1908-16. PubMed ID: 15701681 [TBL] [Abstract][Full Text] [Related]