67 related articles for article (PubMed ID: 27105847)
1. SL2: an interactive webtool for modeling of missing segments in proteins.
Ismer J; Rose AS; Tiemann JK; Goede A; Preissner R; Hildebrand PW
Nucleic Acids Res; 2016 Jul; 44(W1):W390-4. PubMed ID: 27105847
[TBL] [Abstract][Full Text] [Related]
2. NGL Viewer: a web application for molecular visualization.
Rose AS; Hildebrand PW
Nucleic Acids Res; 2015 Jul; 43(W1):W576-9. PubMed ID: 25925569
[TBL] [Abstract][Full Text] [Related]
3. CASTp: Computed Atlas of Surface Topography of proteins.
Binkowski TA; Naghibzadeh S; Liang J
Nucleic Acids Res; 2003 Jul; 31(13):3352-5. PubMed ID: 12824325
[TBL] [Abstract][Full Text] [Related]
4. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.
Hodis E; Prilusky J; Martz E; Silman I; Moult J; Sussman JL
Genome Biol; 2008; 9(8):R121. PubMed ID: 18673581
[TBL] [Abstract][Full Text] [Related]
5. BioPPSy: An Open-Source Platform for QSAR/QSPR Analysis.
Enciso M; Meftahi N; Walker ML; Smith BJ
PLoS One; 2016; 11(11):e0166298. PubMed ID: 27832156
[TBL] [Abstract][Full Text] [Related]
6. phraSED-ML: A paraphrased, human-readable adaptation of SED-ML.
Choi K; Smith LP; Medley JK; Sauro HM
J Bioinform Comput Biol; 2016 Dec; 14(6):1650035. PubMed ID: 27774871
[TBL] [Abstract][Full Text] [Related]
7. Improve homology search sensitivity of PacBio data by correcting frameshifts.
Du N; Sun Y
Bioinformatics; 2016 Sep; 32(17):i529-i537. PubMed ID: 27587671
[TBL] [Abstract][Full Text] [Related]
8. Comprehensive assessment of protein loop modeling programs on large-scale datasets: prediction accuracy and efficiency.
Wang T; Wang L; Zhang X; Shen C; Zhang O; Wang J; Wu J; Jin R; Zhou D; Chen S; Liu L; Wang X; Hsieh CY; Chen G; Pan P; Kang Y; Hou T
Brief Bioinform; 2023 Nov; 25(1):. PubMed ID: 38171930
[TBL] [Abstract][Full Text] [Related]
9. Benchmarking the Accuracy of AlphaFold 2 in Loop Structure Prediction.
Stevens AO; He Y
Biomolecules; 2022 Jul; 12(7):. PubMed ID: 35883541
[TBL] [Abstract][Full Text] [Related]
10. A short HLA-DRA isoform binds the HLA-DR2 heterodimer on the outer domain of the peptide-binding site.
Shams H; Hollenbach JA; Matsunaga A; Mofrad MRK; Oksenberg JR; Didonna A
Arch Biochem Biophys; 2022 Apr; 719():109156. PubMed ID: 35218721
[TBL] [Abstract][Full Text] [Related]
11. Molecular dynamics: a powerful tool for studying the medicinal chemistry of ion channel modulators.
Şterbuleac D
RSC Med Chem; 2021 Sep; 12(9):1503-1518. PubMed ID: 34671734
[TBL] [Abstract][Full Text] [Related]
12. Peptide Sequence Mapping around Bisecting GlcNAc-Bearing
Ohkawa Y; Kizuka Y; Takata M; Nakano M; Ito E; Mishra SK; Akatsuka H; Harada Y; Taniguchi N
Int J Mol Sci; 2021 Aug; 22(16):. PubMed ID: 34445285
[No Abstract] [Full Text] [Related]
13. ProMod3-A versatile homology modelling toolbox.
Studer G; Tauriello G; Bienert S; Biasini M; Johner N; Schwede T
PLoS Comput Biol; 2021 Jan; 17(1):e1008667. PubMed ID: 33507980
[TBL] [Abstract][Full Text] [Related]
14. The Dynamics of the Neuropeptide Y Receptor Type 1 Investigated by Solid-State NMR and Molecular Dynamics Simulation.
Vogel A; Bosse M; Gauglitz M; Wistuba S; Schmidt P; Kaiser A; Gurevich VV; Beck-Sickinger AG; Hildebrand PW; Huster D
Molecules; 2020 Nov; 25(23):. PubMed ID: 33255213
[TBL] [Abstract][Full Text] [Related]
15. A splice acceptor variant in HLA-DRA affects the conformation and cellular localization of the class II DR alpha-chain.
Didonna A; Damotte V; Shams H; Matsunaga A; Caillier SJ; Dandekar R; Misra MK; Mofrad MRK; Oksenberg JR; Hollenbach JA
Immunology; 2021 Feb; 162(2):194-207. PubMed ID: 32986852
[TBL] [Abstract][Full Text] [Related]
16. Modeling cancer genomic data in yeast reveals selection against ATM function during tumorigenesis.
Hohl M; Mojumdar A; Hailemariam S; Kuryavyi V; Ghisays F; Sorenson K; Chang M; Taylor BS; Patel DJ; Burgers PM; Cobb JA; Petrini JHJ
PLoS Genet; 2020 Mar; 16(3):e1008422. PubMed ID: 32187176
[TBL] [Abstract][Full Text] [Related]
17. DaReUS-Loop: a web server to model multiple loops in homology models.
Karami Y; Rey J; Postic G; Murail S; Tufféry P; de Vries SJ
Nucleic Acids Res; 2019 Jul; 47(W1):W423-W428. PubMed ID: 31114872
[TBL] [Abstract][Full Text] [Related]
18. DaReUS-Loop: accurate loop modeling using fragments from remote or unrelated proteins.
Karami Y; Guyon F; De Vries S; Tufféry P
Sci Rep; 2018 Sep; 8(1):13673. PubMed ID: 30209260
[TBL] [Abstract][Full Text] [Related]
19. FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps.
Tiemann JK; Rose AS; Ismer J; Darvish MD; Hilal T; Spahn CM; Hildebrand PW
Nucleic Acids Res; 2018 Jul; 46(W1):W310-W314. PubMed ID: 29788317
[TBL] [Abstract][Full Text] [Related]
20. A fragment based method for modeling of protein segments into cryo-EM density maps.
Ismer J; Rose AS; Tiemann JKS; Hildebrand PW
BMC Bioinformatics; 2017 Nov; 18(1):475. PubMed ID: 29132296
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]