284 related articles for article (PubMed ID: 27106060)
1. PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases.
Floden EW; Tommaso PD; Chatzou M; Magis C; Notredame C; Chang JM
Nucleic Acids Res; 2016 Jul; 44(W1):W339-43. PubMed ID: 27106060
[TBL] [Abstract][Full Text] [Related]
2. Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee.
Chang JM; Di Tommaso P; Taly JF; Notredame C
BMC Bioinformatics; 2012 Mar; 13 Suppl 4(Suppl 4):S1. PubMed ID: 22536955
[TBL] [Abstract][Full Text] [Related]
3. PROMALS web server for accurate multiple protein sequence alignments.
Pei J; Kim BH; Tang M; Grishin NV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
[TBL] [Abstract][Full Text] [Related]
4. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
Moretti S; Armougom F; Wallace IM; Higgins DG; Jongeneel CV; Notredame C
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W645-8. PubMed ID: 17526519
[TBL] [Abstract][Full Text] [Related]
5. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Pei J; Grishin NV
Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
[TBL] [Abstract][Full Text] [Related]
6. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.
Di Tommaso P; Moretti S; Xenarios I; Orobitg M; Montanyola A; Chang JM; Taly JF; Notredame C
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W13-7. PubMed ID: 21558174
[TBL] [Abstract][Full Text] [Related]
7. TM-Aligner: Multiple sequence alignment tool for transmembrane proteins with reduced time and improved accuracy.
Bhat B; Ganai NA; Andrabi SM; Shah RA; Singh A
Sci Rep; 2017 Oct; 7(1):12543. PubMed ID: 28970546
[TBL] [Abstract][Full Text] [Related]
8. The SSEA server for protein secondary structure alignment.
Fontana P; Bindewald E; Toppo S; Velasco R; Valle G; Tosatto SC
Bioinformatics; 2005 Feb; 21(3):393-5. PubMed ID: 15347578
[TBL] [Abstract][Full Text] [Related]
9. APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
Armougom F; Poirot O; Moretti S; Higgins DG; Bucher P; Keduas V; Notredame C
Bioinformatics; 2006 Oct; 22(19):2439-40. PubMed ID: 17032685
[TBL] [Abstract][Full Text] [Related]
10. Improvement in the accuracy of multiple sequence alignment program MAFFT.
Katoh K; Kuma K; Miyata T; Toh H
Genome Inform; 2005; 16(1):22-33. PubMed ID: 16362903
[TBL] [Abstract][Full Text] [Related]
11. The InterPro database and tools for protein domain analysis.
Mulder NJ; Apweiler R
Curr Protoc Bioinformatics; 2008 Mar; Chapter 2():Unit 2.7. PubMed ID: 18428686
[TBL] [Abstract][Full Text] [Related]
12. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
Zhou H; Zhou Y
Bioinformatics; 2005 Sep; 21(18):3615-21. PubMed ID: 16020471
[TBL] [Abstract][Full Text] [Related]
13. TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
Tusnády GE; Kalmár L; Hegyi H; Tompa P; Simon I
Bioinformatics; 2008 Jun; 24(12):1469-70. PubMed ID: 18434342
[TBL] [Abstract][Full Text] [Related]
14. COMPASS server for remote homology inference.
Sadreyev RI; Tang M; Kim BH; Grishin NV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W653-8. PubMed ID: 17517780
[TBL] [Abstract][Full Text] [Related]
15. IPPRED: server for proteins interactions inference.
Goffard N; Garcia V; Iragne F; Groppi A; de Daruvar A
Bioinformatics; 2003 May; 19(7):903-4. PubMed ID: 12724307
[TBL] [Abstract][Full Text] [Related]
16. SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser.
Walsh TP; Webber C; Searle S; Sturrock SS; Barton GJ
Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W25-9. PubMed ID: 18503088
[TBL] [Abstract][Full Text] [Related]
17. TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction.
Chang JM; Di Tommaso P; Lefort V; Gascuel O; Notredame C
Nucleic Acids Res; 2015 Jul; 43(W1):W3-6. PubMed ID: 25855806
[TBL] [Abstract][Full Text] [Related]
18. R-Coffee: a web server for accurately aligning noncoding RNA sequences.
Moretti S; Wilm A; Higgins DG; Xenarios I; Notredame C
Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W10-3. PubMed ID: 18483080
[TBL] [Abstract][Full Text] [Related]
19. Dali server update.
Holm L; Laakso LM
Nucleic Acids Res; 2016 Jul; 44(W1):W351-5. PubMed ID: 27131377
[TBL] [Abstract][Full Text] [Related]
20. DOMAC: an accurate, hybrid protein domain prediction server.
Cheng J
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W354-6. PubMed ID: 17553833
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
