These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. Optimization of Acquisition and Data-Processing Parameters for Improved Proteomic Quantification by Sequential Window Acquisition of All Theoretical Fragment Ion Mass Spectrometry. Li S; Cao Q; Xiao W; Guo Y; Yang Y; Duan X; Shui W J Proteome Res; 2017 Feb; 16(2):738-747. PubMed ID: 27995803 [TBL] [Abstract][Full Text] [Related]
5. SWATH enables precise label-free quantification on proteome scale. Huang Q; Yang L; Luo J; Guo L; Wang Z; Yang X; Jin W; Fang Y; Ye J; Shan B; Zhang Y Proteomics; 2015 Apr; 15(7):1215-23. PubMed ID: 25560523 [TBL] [Abstract][Full Text] [Related]
6. Quantification of Changes in Protein Expression Using SWATH Proteomics. Braccia C; Liessi N; Armirotti A Methods Mol Biol; 2021; 2361():75-94. PubMed ID: 34236656 [TBL] [Abstract][Full Text] [Related]
7. Using ion purity scores for enhancing quantitative accuracy and precision in complex proteomics samples. Geromanos SJ; Hughes C; Ciavarini S; Vissers JP; Langridge JI Anal Bioanal Chem; 2012 Sep; 404(4):1127-39. PubMed ID: 22811061 [TBL] [Abstract][Full Text] [Related]
8. Systematic Assessment of the Effect of Internal Library in Targeted Analysis of SWATH-MS. Zhong CQ; Wu R; Chen X; Wu S; Shuai J; Han J J Proteome Res; 2020 Jan; 19(1):477-492. PubMed ID: 31664839 [TBL] [Abstract][Full Text] [Related]
9. SWATH Mass Spectrometry for Proteomics of Non-Depleted Plasma. Krisp C; Molloy MP Methods Mol Biol; 2017; 1619():373-383. PubMed ID: 28674897 [TBL] [Abstract][Full Text] [Related]
10. Expansion of the ion library for mining SWATH-MS data through fractionation proteomics. Zi J; Zhang S; Zhou R; Zhou B; Xu S; Hou G; Tan F; Wen B; Wang Q; Lin L; Liu S Anal Chem; 2014 Aug; 86(15):7242-6. PubMed ID: 24969961 [TBL] [Abstract][Full Text] [Related]
11. DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics. Midha MK; Campbell DS; Kapil C; Kusebauch U; Hoopmann MR; Bader SL; Moritz RL Nat Commun; 2020 Oct; 11(1):5251. PubMed ID: 33067471 [TBL] [Abstract][Full Text] [Related]
12. MSE for Label-Free Absolute Protein Quantification in Complex Proteomes. Helm S; Baginsky S Methods Mol Biol; 2018; 1696():235-247. PubMed ID: 29086408 [TBL] [Abstract][Full Text] [Related]
13. SWATH mass spectrometry as a tool for quantitative profiling of the matrisome. Krasny L; Bland P; Kogata N; Wai P; Howard BA; Natrajan RC; Huang PH J Proteomics; 2018 Oct; 189():11-22. PubMed ID: 29501709 [TBL] [Abstract][Full Text] [Related]
14. Comparing SRM and SWATH Methods for Quantitation of Bovine Muscle Proteomes. Wu W; Dai RT; Bendixen E J Agric Food Chem; 2019 Feb; 67(5):1608-1618. PubMed ID: 30624930 [TBL] [Abstract][Full Text] [Related]
15. Next Generation Proteomics for Clinical Biomarker Detection Using SWATH-MS. Lin Q; Tan HT; Chung MCM Methods Mol Biol; 2019; 1977():3-15. PubMed ID: 30980318 [TBL] [Abstract][Full Text] [Related]
16. Comprehensive MS/MS profiling by UHPLC-ESI-QTOF-MS/MS using SWATH data-independent acquisition for the study of platelet lipidomes in coronary artery disease. Schlotterbeck J; Chatterjee M; Gawaz M; Lämmerhofer M Anal Chim Acta; 2019 Jan; 1046():1-15. PubMed ID: 30482286 [TBL] [Abstract][Full Text] [Related]
17. Applying 'Sequential Windowed Acquisition of All Theoretical Fragment Ion Mass Spectra' (SWATH) for systematic toxicological analysis with liquid chromatography-high-resolution tandem mass spectrometry. Arnhard K; Gottschall A; Pitterl F; Oberacher H Anal Bioanal Chem; 2015 Jan; 407(2):405-14. PubMed ID: 25366975 [TBL] [Abstract][Full Text] [Related]
18. Combining label-free and label-based accurate quantifications with SWATH-MS: Comparison with SRM and PRM for the evaluation of bovine muscle type effects. Bons J; Husson G; Chion M; Bonnet M; Maumy-Bertrand M; Delalande F; Cianférani S; Bertrand F; Picard B; Carapito C Proteomics; 2021 May; 21(10):e2000214. PubMed ID: 33733615 [TBL] [Abstract][Full Text] [Related]
19. A Combined Chemical Derivatization/Mass Spectrometric Method for the Enhanced Detection and Relative Quantification of Protein Ubiquitination. Chicooree N; Griffiths JR Methods Mol Biol; 2019; 1977():17-24. PubMed ID: 30980319 [TBL] [Abstract][Full Text] [Related]