126 related articles for article (PubMed ID: 27115635)
21. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
22. An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution matrices.
Bulka B; desJardins M; Freeland SJ
BMC Bioinformatics; 2006 Jul; 7():329. PubMed ID: 16817972
[TBL] [Abstract][Full Text] [Related]
23. Performance evaluation of amino acid substitution matrices.
Henikoff S; Henikoff JG
Proteins; 1993 Sep; 17(1):49-61. PubMed ID: 8234244
[TBL] [Abstract][Full Text] [Related]
24. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
Tan YH; Huang H; Kihara D
Proteins; 2006 Aug; 64(3):587-600. PubMed ID: 16799934
[TBL] [Abstract][Full Text] [Related]
25. Amino acid "little Big Bang": representing amino acid substitution matrices as dot products of Euclidian vectors.
Zimmermann K; Gibrat JF
BMC Bioinformatics; 2010 Jan; 11():4. PubMed ID: 20047649
[TBL] [Abstract][Full Text] [Related]
26. A metric model of amino acid substitution.
Xu W; Miranker DP
Bioinformatics; 2004 May; 20(8):1214-21. PubMed ID: 14871874
[TBL] [Abstract][Full Text] [Related]
27. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
Wang J; Feng JA
Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
[TBL] [Abstract][Full Text] [Related]
28. A comprehensive review and comparison of different computational methods for protein remote homology detection.
Chen J; Guo M; Wang X; Liu B
Brief Bioinform; 2018 Mar; 19(2):231-244. PubMed ID: 27881430
[TBL] [Abstract][Full Text] [Related]
29. The compositional adjustment of amino acid substitution matrices.
Yu YK; Wootton JC; Altschul SF
Proc Natl Acad Sci U S A; 2003 Dec; 100(26):15688-93. PubMed ID: 14663142
[TBL] [Abstract][Full Text] [Related]
30. Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap.
Price GA; Crooks GE; Green RE; Brenner SE
Bioinformatics; 2005 Oct; 21(20):3824-31. PubMed ID: 16105900
[TBL] [Abstract][Full Text] [Related]
31. ALIGN_MTX--an optimal pairwise textual sequence alignment program, adapted for using in sequence-structure alignment.
Vishnepolsky B; Pirtskhalava M
Comput Biol Chem; 2009 Jun; 33(3):235-8. PubMed ID: 19477686
[TBL] [Abstract][Full Text] [Related]
32. State-of-the-art bioinformatics protein structure prediction tools (Review).
Pavlopoulou A; Michalopoulos I
Int J Mol Med; 2011 Sep; 28(3):295-310. PubMed ID: 21617841
[TBL] [Abstract][Full Text] [Related]
33. SWAKK: a web server for detecting positive selection in proteins using a sliding window substitution rate analysis.
Liang H; Zhou W; Landweber LF
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W382-4. PubMed ID: 16845032
[TBL] [Abstract][Full Text] [Related]
34. Enriching the sequence substitution matrix by structural information.
Teodorescu O; Galor T; Pillardy J; Elber R
Proteins; 2004 Jan; 54(1):41-8. PubMed ID: 14705022
[TBL] [Abstract][Full Text] [Related]
35. Ideal amino acid exchange forms for approximating substitution matrices.
Pokarowski P; Kloczkowski A; Nowakowski S; Pokarowska M; Jernigan RL; Kolinski A
Proteins; 2007 Nov; 69(2):379-93. PubMed ID: 17623859
[TBL] [Abstract][Full Text] [Related]
36. An expectation maximization algorithm for training hidden substitution models.
Holmes I; Rubin GM
J Mol Biol; 2002 Apr; 317(5):753-64. PubMed ID: 11955022
[TBL] [Abstract][Full Text] [Related]
37. Pairwise alignment incorporating dipeptide covariation.
Crooks GE; Green RE; Brenner SE
Bioinformatics; 2005 Oct; 21(19):3704-10. PubMed ID: 16123116
[TBL] [Abstract][Full Text] [Related]
38. Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection.
Damoulas T; Girolami MA
Bioinformatics; 2008 May; 24(10):1264-70. PubMed ID: 18378524
[TBL] [Abstract][Full Text] [Related]
39. Substitution matrices of residue triplets derived from protein blocks.
Liu X; Zhao YP
J Comput Biol; 2010 Dec; 17(12):1679-87. PubMed ID: 21128854
[TBL] [Abstract][Full Text] [Related]
40. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
Domingues FS; Lackner P; Andreeva A; Sippl MJ
J Mol Biol; 2000 Apr; 297(4):1003-13. PubMed ID: 10736233
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]