401 related articles for article (PubMed ID: 27130479)
1. IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data.
Mysara M; Leys N; Raes J; Monsieurs P
BMC Bioinformatics; 2016 Apr; 17(1):192. PubMed ID: 27130479
[TBL] [Abstract][Full Text] [Related]
2. NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads.
Mysara M; Leys N; Raes J; Monsieurs P
BMC Bioinformatics; 2015 Mar; 16(1):88. PubMed ID: 25888405
[TBL] [Abstract][Full Text] [Related]
3. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.
Mysara M; Njima M; Leys N; Raes J; Monsieurs P
Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369460
[TBL] [Abstract][Full Text] [Related]
4. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
5. Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform.
Jeon YS; Park SC; Lim J; Chun J; Kim BS
J Microbiol; 2015 Jan; 53(1):60-9. PubMed ID: 25557481
[TBL] [Abstract][Full Text] [Related]
6. MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing.
Parikh HI; Koparde VN; Bradley SP; Buck GA; Sheth NU
BMC Bioinformatics; 2016 Dec; 17(1):491. PubMed ID: 27905885
[TBL] [Abstract][Full Text] [Related]
7. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.
de Muinck EJ; Trosvik P; Gilfillan GD; Hov JR; Sundaram AYM
Microbiome; 2017 Jul; 5(1):68. PubMed ID: 28683838
[TBL] [Abstract][Full Text] [Related]
8. Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences.
Narayan NR; Weinmaier T; Laserna-Mendieta EJ; Claesson MJ; Shanahan F; Dabbagh K; Iwai S; DeSantis TZ
BMC Genomics; 2020 Jan; 21(1):56. PubMed ID: 31952477
[TBL] [Abstract][Full Text] [Related]
9. Analysis of 16S rRNA Gene Amplicon Sequences Using the QIIME Software Package.
Lawley B; Tannock GW
Methods Mol Biol; 2017; 1537():153-163. PubMed ID: 27924593
[TBL] [Abstract][Full Text] [Related]
10. Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.
Franzén O; Hu J; Bao X; Itzkowitz SH; Peter I; Bashir A
Microbiome; 2015 Oct; 3():43. PubMed ID: 26434730
[TBL] [Abstract][Full Text] [Related]
11. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products.
Xue Z; Kable ME; Marco ML
mSphere; 2018 Oct; 3(5):. PubMed ID: 30333179
[TBL] [Abstract][Full Text] [Related]
12. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
[TBL] [Abstract][Full Text] [Related]
13. Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys.
Nelson MC; Morrison HG; Benjamino J; Grim SL; Graf J
PLoS One; 2014; 9(4):e94249. PubMed ID: 24722003
[TBL] [Abstract][Full Text] [Related]
14. Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene.
Allen HK; Bayles DO; Looft T; Trachsel J; Bass BE; Alt DP; Bearson SM; Nicholson T; Casey TA
BMC Res Notes; 2016 Aug; 9():380. PubMed ID: 27485508
[TBL] [Abstract][Full Text] [Related]
15. Microbial community profiling of fresh basil and pitfalls in taxonomic assignment of enterobacterial pathogenic species based upon 16S rRNA amplicon sequencing.
Ceuppens S; De Coninck D; Bottledoorn N; Van Nieuwerburgh F; Uyttendaele M
Int J Food Microbiol; 2017 Sep; 257():148-156. PubMed ID: 28666129
[TBL] [Abstract][Full Text] [Related]
16. A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform.
Hirose Y; Shiozaki T; Hamano I; Yoshihara S; Tokumoto H; Eki T; Harada N
DNA Res; 2020 Aug; 27(4):. PubMed ID: 32810209
[TBL] [Abstract][Full Text] [Related]
17. Reconciliation between operational taxonomic units and species boundaries.
Mysara M; Vandamme P; Props R; Kerckhof FM; Leys N; Boon N; Raes J; Monsieurs P
FEMS Microbiol Ecol; 2017 Apr; 93(4):. PubMed ID: 28334218
[TBL] [Abstract][Full Text] [Related]
18. Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform.
Schirmer M; Ijaz UZ; D'Amore R; Hall N; Sloan WT; Quince C
Nucleic Acids Res; 2015 Mar; 43(6):e37. PubMed ID: 25586220
[TBL] [Abstract][Full Text] [Related]
19. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
[TBL] [Abstract][Full Text] [Related]
20. Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform.
Wen C; Wu L; Qin Y; Van Nostrand JD; Ning D; Sun B; Xue K; Liu F; Deng Y; Liang Y; Zhou J
PLoS One; 2017; 12(4):e0176716. PubMed ID: 28453559
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
