These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
161 related articles for article (PubMed ID: 27131358)
1. MANORAA (Mapping Analogous Nuclei Onto Residue And Affinity) for identifying protein-ligand fragment interaction, pathways and SNPs. Tanramluk D; Narupiyakul L; Akavipat R; Gong S; Charoensawan V Nucleic Acids Res; 2016 Jul; 44(W1):W514-21. PubMed ID: 27131358 [TBL] [Abstract][Full Text] [Related]
2. ProCarbDB: a database of carbohydrate-binding proteins. Copoiu L; Torres PHM; Ascher DB; Blundell TL; Malhotra S Nucleic Acids Res; 2020 Jan; 48(D1):D368-D375. PubMed ID: 31598690 [TBL] [Abstract][Full Text] [Related]
3. GenProBiS: web server for mapping of sequence variants to protein binding sites. Konc J; Skrlj B; Erzen N; Kunej T; Janezic D Nucleic Acids Res; 2017 Jul; 45(W1):W253-W259. PubMed ID: 28498966 [TBL] [Abstract][Full Text] [Related]
4. A web server for analysis, comparison and prediction of protein ligand binding sites. Singh H; Srivastava HK; Raghava GP Biol Direct; 2016 Mar; 11(1):14. PubMed ID: 27016210 [TBL] [Abstract][Full Text] [Related]
5. SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. Teyra J; Doms A; Schroeder M; Pisabarro MT BMC Bioinformatics; 2006 Mar; 7():104. PubMed ID: 16512892 [TBL] [Abstract][Full Text] [Related]
6. PPInterface: A Comprehensive Dataset of 3D Protein-Protein Interface Structures. Abali Z; Aydin Z; Khokhar M; Ates YC; Gursoy A; Keskin O J Mol Biol; 2024 Sep; 436(17):168686. PubMed ID: 38936693 [TBL] [Abstract][Full Text] [Related]
7. ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites. Konc J; Miller BT; Štular T; Lešnik S; Woodcock HL; Brooks BR; Janežič D J Chem Inf Model; 2015 Nov; 55(11):2308-14. PubMed ID: 26509288 [TBL] [Abstract][Full Text] [Related]
8. PDB-tools web: A user-friendly interface for the manipulation of PDB files. Jiménez-García B; Teixeira JMC; Trellet M; Rodrigues JPGLM; Bonvin AMJJ Proteins; 2021 Mar; 89(3):330-335. PubMed ID: 33111403 [TBL] [Abstract][Full Text] [Related]
9. MODBASE: a database of annotated comparative protein structure models and associated resources. Pieper U; Eswar N; Davis FP; Braberg H; Madhusudhan MS; Rossi A; Marti-Renom M; Karchin R; Webb BM; Eramian D; Shen MY; Kelly L; Melo F; Sali A Nucleic Acids Res; 2006 Jan; 34(Database issue):D291-5. PubMed ID: 16381869 [TBL] [Abstract][Full Text] [Related]
14. PatchSearch: a web server for off-target protein identification. Rey J; Rasolohery I; Tufféry P; Guyon F; Moroy G Nucleic Acids Res; 2019 Jul; 47(W1):W365-W372. PubMed ID: 31131411 [TBL] [Abstract][Full Text] [Related]
15. Residue preference mapping of ligand fragments in the Protein Data Bank. Wang L; Xie Z; Wipf P; Xie XQ J Chem Inf Model; 2011 Apr; 51(4):807-15. PubMed ID: 21417260 [TBL] [Abstract][Full Text] [Related]
16. BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. Liu T; Lin Y; Wen X; Jorissen RN; Gilson MK Nucleic Acids Res; 2007 Jan; 35(Database issue):D198-201. PubMed ID: 17145705 [TBL] [Abstract][Full Text] [Related]
18. PLI: a web-based tool for the comparison of protein-ligand interactions observed on PDB structures. Gallina AM; Bisignano P; Bergamino M; Bordo D Bioinformatics; 2013 Feb; 29(3):395-7. PubMed ID: 23196990 [TBL] [Abstract][Full Text] [Related]