BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

423 related articles for article (PubMed ID: 27159086)

  • 1. A hybrid approach for de novo human genome sequence assembly and phasing.
    Mostovoy Y; Levy-Sakin M; Lam J; Lam ET; Hastie AR; Marks P; Lee J; Chu C; Lin C; Džakula Ž; Cao H; Schlebusch SA; Giorda K; Schnall-Levin M; Wall JD; Kwok PY
    Nat Methods; 2016 Jul; 13(7):587-90. PubMed ID: 27159086
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genetic variation and the de novo assembly of human genomes.
    Chaisson MJ; Wilson RK; Eichler EE
    Nat Rev Genet; 2015 Nov; 16(11):627-40. PubMed ID: 26442640
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Fully Phased Sequence of a Diploid Human Genome Determined
    Soifer L; Fong NL; Yi N; Ireland AT; Lam I; Sooknah M; Paw JS; Peluso P; Concepcion GT; Rank D; Hastie AR; Jojic V; Ruby JG; Botstein D; Roy MA
    G3 (Bethesda); 2020 Sep; 10(9):2911-2925. PubMed ID: 32631951
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Hybrid assembly of ultra-long Nanopore reads augmented with 10x-Genomics contigs: Demonstrated with a human genome.
    Ma ZS; Li L; Ye C; Peng M; Zhang YP
    Genomics; 2019 Dec; 111(6):1896-1901. PubMed ID: 30594583
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A linked-read approach to museomics: Higher quality de novo genome assemblies from degraded tissues.
    Colella JP; Tigano A; MacManes MD
    Mol Ecol Resour; 2020 Jul; 20(4):856-870. PubMed ID: 32153100
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
    Zhang F; Christiansen L; Thomas J; Pokholok D; Jackson R; Morrell N; Zhao Y; Wiley M; Welch E; Jaeger E; Granat A; Norberg SJ; Halpern A; C Rogert M; Ronaghi M; Shendure J; Gormley N; Gunderson KL; Steemers FJ
    Nat Biotechnol; 2017 Sep; 35(9):852-857. PubMed ID: 28650462
    [TBL] [Abstract][Full Text] [Related]  

  • 7. De novo assembly and phasing of a Korean human genome.
    Seo JS; Rhie A; Kim J; Lee S; Sohn MH; Kim CU; Hastie A; Cao H; Yun JY; Kim J; Kuk J; Park GH; Kim J; Ryu H; Kim J; Roh M; Baek J; Hunkapiller MW; Korlach J; Shin JY; Kim C
    Nature; 2016 Oct; 538(7624):243-247. PubMed ID: 27706134
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Optical Nano-mapping and Analysis of Plant Genomes.
    Luo MC; Deal KR; Murray A; Zhu T; Hastie AR; Stedman W; Sadowski H; Saghbini M
    Methods Mol Biol; 2016; 1429():103-17. PubMed ID: 27511170
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Assembly and diploid architecture of an individual human genome via single-molecule technologies.
    Pendleton M; Sebra R; Pang AW; Ummat A; Franzen O; Rausch T; Stütz AM; Stedman W; Anantharaman T; Hastie A; Dai H; Fritz MH; Cao H; Cohain A; Deikus G; Durrett RE; Blanchard SC; Altman R; Chin CS; Guo Y; Paxinos EE; Korbel JO; Darnell RB; McCombie WR; Kwok PY; Mason CE; Schadt EE; Bashir A
    Nat Methods; 2015 Aug; 12(8):780-6. PubMed ID: 26121404
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BLR: a flexible pipeline for haplotype analysis of multiple linked-read technologies.
    Höjer P; Frick T; Siga H; Pourbozorgi P; Aghelpasand H; Martin M; Ahmadian A
    Nucleic Acids Res; 2023 Dec; 51(22):e114. PubMed ID: 37941142
    [TBL] [Abstract][Full Text] [Related]  

  • 11. De novo assembly of a haplotype-resolved human genome.
    Cao H; Wu H; Luo R; Huang S; Sun Y; Tong X; Xie Y; Liu B; Yang H; Zheng H; Li J; Li B; Wang Y; Yang F; Sun P; Liu S; Gao P; Huang H; Sun J; Chen D; He G; Huang W; Huang Z; Li Y; Tellier LC; Liu X; Feng Q; Xu X; Zhang X; Bolund L; Krogh A; Kristiansen K; Drmanac R; Drmanac S; Nielsen R; Li S; Wang J; Yang H; Li Y; Wong GK; Wang J
    Nat Biotechnol; 2015 Jun; 33(6):617-22. PubMed ID: 26006006
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Linked-read sequencing enables haplotype-resolved resequencing at population scale.
    Lutgen D; Ritter R; Olsen RA; Schielzeth H; Gruselius J; Ewels P; García JT; Shirihai H; Schweizer M; Suh A; Burri R
    Mol Ecol Resour; 2020 Sep; 20(5):1311-1322. PubMed ID: 32419391
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
    Porubsky D; Ebert P; Audano PA; Vollger MR; Harvey WT; Marijon P; Ebler J; Munson KM; Sorensen M; Sulovari A; Haukness M; Ghareghani M; ; Lansdorp PM; Paten B; Devine SE; Sanders AD; Lee C; Chaisson MJP; Korbel JO; Eichler EE; Marschall T
    Nat Biotechnol; 2021 Mar; 39(3):302-308. PubMed ID: 33288906
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
    Kronenberg ZN; Rhie A; Koren S; Concepcion GT; Peluso P; Munson KM; Porubsky D; Kuhn K; Mueller KA; Low WY; Hiendleder S; Fedrigo O; Liachko I; Hall RJ; Phillippy AM; Eichler EE; Williams JL; Smith TPL; Jarvis ED; Sullivan ST; Kingan SB
    Nat Commun; 2021 Apr; 12(1):1935. PubMed ID: 33911078
    [TBL] [Abstract][Full Text] [Related]  

  • 15. New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing.
    Martinez-Viaud KA; Lawley CT; Vergara MM; Ben-Zvi G; Biniashvili T; Baruch K; St Leger J; Le J; Natarajan A; Rivera M; Guillergan M; Jaeger E; Steffy B; Zimin A
    Gigascience; 2019 Mar; 8(3):. PubMed ID: 30698692
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bionano Genome Mapping: High-Throughput, Ultra-Long Molecule Genome Analysis System for Precision Genome Assembly and Haploid-Resolved Structural Variation Discovery.
    Bocklandt S; Hastie A; Cao H
    Adv Exp Med Biol; 2019; 1129():97-118. PubMed ID: 30968363
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Semi-automated assembly of high-quality diploid human reference genomes.
    Jarvis ED; Formenti G; Rhie A; Guarracino A; Yang C; Wood J; Tracey A; Thibaud-Nissen F; Vollger MR; Porubsky D; Cheng H; Asri M; Logsdon GA; Carnevali P; Chaisson MJP; Chin CS; Cody S; Collins J; Ebert P; Escalona M; Fedrigo O; Fulton RS; Fulton LL; Garg S; Gerton JL; Ghurye J; Granat A; Green RE; Harvey W; Hasenfeld P; Hastie A; Haukness M; Jaeger EB; Jain M; Kirsche M; Kolmogorov M; Korbel JO; Koren S; Korlach J; Lee J; Li D; Lindsay T; Lucas J; Luo F; Marschall T; Mitchell MW; McDaniel J; Nie F; Olsen HE; Olson ND; Pesout T; Potapova T; Puiu D; Regier A; Ruan J; Salzberg SL; Sanders AD; Schatz MC; Schmitt A; Schneider VA; Selvaraj S; Shafin K; Shumate A; Stitziel NO; Stober C; Torrance J; Wagner J; Wang J; Wenger A; Xiao C; Zimin AV; Zhang G; Wang T; Li H; Garrison E; Haussler D; Hall I; Zook JM; Eichler EE; Phillippy AM; Paten B; Howe K; Miga KH;
    Nature; 2022 Nov; 611(7936):519-531. PubMed ID: 36261518
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Phased Genome Sequencing Through Chromosome Sorting.
    Chen X; Yang H; Wong WH
    Methods Mol Biol; 2017; 1551():171-188. PubMed ID: 28138847
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome Sequencing.
    Yoshinaga Y; Daum C; He G; O'Malley R
    Methods Mol Biol; 2018; 1775():37-52. PubMed ID: 29876807
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The present and future of de novo whole-genome assembly.
    Sohn JI; Nam JW
    Brief Bioinform; 2018 Jan; 19(1):23-40. PubMed ID: 27742661
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 22.