These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
199 related articles for article (PubMed ID: 27161244)
1. SeqPurge: highly-sensitive adapter trimming for paired-end NGS data. Sturm M; Schroeder C; Bauer P BMC Bioinformatics; 2016 May; 17():208. PubMed ID: 27161244 [TBL] [Abstract][Full Text] [Related]
2. Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads. Jiang H; Lei R; Ding SW; Zhu S BMC Bioinformatics; 2014 Jun; 15():182. PubMed ID: 24925680 [TBL] [Abstract][Full Text] [Related]
3. Sequence-matching adapter trimmers generate consistent quality and assembly metrics for Illumina sequencing of RNA viruses. Nabakooza G; Wagner DD; Momin N; Marine RL; Weldon WC; Oberste MS BMC Res Notes; 2024 Oct; 17(1):308. PubMed ID: 39402647 [TBL] [Abstract][Full Text] [Related]
4. Atropos: specific, sensitive, and speedy trimming of sequencing reads. Didion JP; Martin M; Collins FS PeerJ; 2017; 5():e3720. PubMed ID: 28875074 [TBL] [Abstract][Full Text] [Related]
5. An Efficient Trimming Algorithm based on Multi-Feature Fusion Scoring Model for NGS Data. Liao X; Li M; Zou Y; Wu FX; Pan Y; Wang J IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(3):728-738. PubMed ID: 30736001 [TBL] [Abstract][Full Text] [Related]
7. Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data. Sun K Bioinformatics; 2020 Jun; 36(11):3561-3562. PubMed ID: 32159761 [TBL] [Abstract][Full Text] [Related]
9. EARRINGS: an efficient and accurate adapter trimmer entails no a priori adapter sequences. Wang TH; Huang CC; Hung JH Bioinformatics; 2021 Jul; 37(13):1846-1852. PubMed ID: 33459339 [TBL] [Abstract][Full Text] [Related]
10. AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads. Criscuolo A; Brisse S Genomics; 2013; 102(5-6):500-6. PubMed ID: 23912058 [TBL] [Abstract][Full Text] [Related]
12. AfterQC: automatic filtering, trimming, error removing and quality control for fastq data. Chen S; Huang T; Zhou Y; Han Y; Xu M; Gu J BMC Bioinformatics; 2017 Mar; 18(Suppl 3):80. PubMed ID: 28361673 [TBL] [Abstract][Full Text] [Related]
13. AdapterRemoval v2: rapid adapter trimming, identification, and read merging. Schubert M; Lindgreen S; Orlando L BMC Res Notes; 2016 Feb; 9():88. PubMed ID: 26868221 [TBL] [Abstract][Full Text] [Related]
14. EasyQC: Tool with Interactive User Interface for Efficient Next-Generation Sequencing Data Quality Control. Rangamaran VR; Uppili B; Gopal D; Ramalingam K J Comput Biol; 2018 Dec; 25(12):1301-1311. PubMed ID: 30204482 [No Abstract] [Full Text] [Related]
15. Read trimming has minimal effect on bacterial SNP-calling accuracy. Bush SJ Microb Genom; 2020 Dec; 6(12):. PubMed ID: 33332257 [TBL] [Abstract][Full Text] [Related]
16. Atria: an ultra-fast and accurate trimmer for adapter and quality trimming. Chuan J; Zhou A; Hale LR; He M; Li X GigaByte; 2021; 2021():gigabyte31. PubMed ID: 36967729 [TBL] [Abstract][Full Text] [Related]
17. Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA. Lien A; Legori LP; Kraft L; Sackett PW; Renaud G Front Bioinform; 2023; 3():1260486. PubMed ID: 38131007 [TBL] [Abstract][Full Text] [Related]
18. ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research. Pandey RV; Pabinger S; Kriegner A; Weinhäusel A BMC Bioinformatics; 2016 Feb; 17():56. PubMed ID: 26830926 [TBL] [Abstract][Full Text] [Related]
19. AdapterRemoval: easy cleaning of next-generation sequencing reads. Lindgreen S BMC Res Notes; 2012 Jul; 5():337. PubMed ID: 22748135 [TBL] [Abstract][Full Text] [Related]
20. Benefits of merging paired-end reads before pre-processing environmental metagenomics data. Maran MIJ; Davis G DJ Mar Genomics; 2022 Feb; 61():100914. PubMed ID: 34864203 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]