143 related articles for article (PubMed ID: 27170037)
1. SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences.
Pickett BD; Karlinsey SM; Penrod CE; Cormier MJ; Ebbert MT; Shiozawa DK; Whipple CJ; Ridge PG
Bioinformatics; 2016 Sep; 32(17):2707-9. PubMed ID: 27170037
[TBL] [Abstract][Full Text] [Related]
2. Kmer-SSR: a fast and exhaustive SSR search algorithm.
Pickett BD; Miller JB; Ridge PG
Bioinformatics; 2017 Dec; 33(24):3922-3928. PubMed ID: 28968741
[TBL] [Abstract][Full Text] [Related]
3. PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.
Avvaru AK; Sowpati DT; Mishra RK
Bioinformatics; 2018 Mar; 34(6):943-948. PubMed ID: 29121165
[TBL] [Abstract][Full Text] [Related]
4. SSRPrimer and SSR Taxonomy Tree: Biome SSR discovery.
Jewell E; Robinson A; Savage D; Erwin T; Love CG; Lim GA; Li X; Batley J; Spangenberg GC; Edwards D
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W656-9. PubMed ID: 16845092
[TBL] [Abstract][Full Text] [Related]
5. SATIN: a micro and mini satellite mining tool of total genome and coding regions with analysis of perfect repeats polymorphism in coding regions.
Dantas CWD; da Costa Neto SR; Alves SIA; da Costa Pinheiro K; De Los Santos EFF; Ramos RTJ
BMC Bioinformatics; 2024 Jun; 25(1):217. PubMed ID: 38890569
[TBL] [Abstract][Full Text] [Related]
6. Mining for SNPs and SSRs using SNPServer, dbSNP and SSR taxonomy tree.
Batley J; Edwards D
Methods Mol Biol; 2009; 537():303-21. PubMed ID: 19378151
[TBL] [Abstract][Full Text] [Related]
7. Simple sequence repeat marker loci discovery using SSR primer.
Robinson AJ; Love CG; Batley J; Barker G; Edwards D
Bioinformatics; 2004 Jun; 20(9):1475-6. PubMed ID: 14962913
[TBL] [Abstract][Full Text] [Related]
8. An accurate and efficient method for large-scale SSR genotyping and applications.
Li L; Fang Z; Zhou J; Chen H; Hu Z; Gao L; Chen L; Ren S; Ma H; Lu L; Zhang W; Peng H
Nucleic Acids Res; 2017 Jun; 45(10):e88. PubMed ID: 28184437
[TBL] [Abstract][Full Text] [Related]
9. SAT, a flexible and optimized Web application for SSR marker development.
Dereeper A; Argout X; Billot C; Rami JF; Ruiz M
BMC Bioinformatics; 2007 Nov; 8():465. PubMed ID: 18047663
[TBL] [Abstract][Full Text] [Related]
10. ESAP plus: a web-based server for EST-SSR marker development.
Ponyared P; Ponsawat J; Tongsima S; Seresangtakul P; Akkasaeng C; Tantisuwichwong N
BMC Genomics; 2016 Dec; 17(Suppl 13):1035. PubMed ID: 28155670
[TBL] [Abstract][Full Text] [Related]
11. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.).
Thiel T; Michalek W; Varshney RK; Graner A
Theor Appl Genet; 2003 Feb; 106(3):411-22. PubMed ID: 12589540
[TBL] [Abstract][Full Text] [Related]
12. Pattern discovery for microsatellite genome analysis.
Kavakiotis I; Triantafyllidis A; Samaras P; Voulgaridis A; Karaiskou N; Konstantinidis E; Vlahavas I
Comput Biol Med; 2014 Mar; 46():71-8. PubMed ID: 24529207
[TBL] [Abstract][Full Text] [Related]
13. In silico search, characterization and validation of new EST-SSR markers in the genus Prunus.
Sorkheh K; Prudencio AS; Ghebinejad A; Dehkordi MK; Erogul D; Rubio M; Martínez-Gómez P
BMC Res Notes; 2016 Jul; 9():336. PubMed ID: 27389023
[TBL] [Abstract][Full Text] [Related]
14. A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences.
Sreeskandarajan S; Flowers MM; Karro JE; Liang C
Bioinformatics; 2014 Mar; 30(6):887-8. PubMed ID: 24215021
[TBL] [Abstract][Full Text] [Related]
15. A database of simple sequence repeats from cereal and legume expressed sequence tags mined in silico: survey and evaluation.
Jayashree B; Punna R; Prasad P; Bantte K; Hash CT; Chandra S; Hoisington DA; Varshney RK
In Silico Biol; 2006; 6(6):607-20. PubMed ID: 17518768
[TBL] [Abstract][Full Text] [Related]
16. An in silico mining for simple sequence repeats from expressed sequence tags of zebrafish, medaka, Fundulus, and Xiphophorus.
Ju Z; Wells MC; Martinez A; Hazlewood L; Walter RB
In Silico Biol; 2005; 5(5-6):439-63. PubMed ID: 16268789
[TBL] [Abstract][Full Text] [Related]
17. Exploitation of pepper EST-SSRs and an SSR-based linkage map.
Yi G; Lee JM; Lee S; Choi D; Kim BD
Theor Appl Genet; 2006 Dec; 114(1):113-30. PubMed ID: 17047912
[TBL] [Abstract][Full Text] [Related]
18. Development and characterization of EST-derived simple sequence repeat (SSR) markers for pasture grass endophytes.
van Zijll de Jong E; Guthridge KM; Spangenberg GC; Forster JW
Genome; 2003 Apr; 46(2):277-90. PubMed ID: 12723044
[TBL] [Abstract][Full Text] [Related]
19. FMtree: a fast locating algorithm of FM-indexes for genomic data.
Cheng H; Wu M; Xu Y
Bioinformatics; 2018 Feb; 34(3):416-424. PubMed ID: 28968761
[TBL] [Abstract][Full Text] [Related]
20. The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean.
Shultz JL; Kazi S; Bashir R; Afzal JA; Lightfoot DA
Theor Appl Genet; 2007 Apr; 114(6):1081-90. PubMed ID: 17287974
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]