These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

257 related articles for article (PubMed ID: 27171075)

  • 1. Study on the Application of the Combination of TMD Simulation and Umbrella Sampling in PMF Calculation for Molecular Conformational Transitions.
    Wang Q; Xue T; Song C; Wang Y; Chen G
    Int J Mol Sci; 2016 May; 17(5):. PubMed ID: 27171075
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Molecular Mechanism Behind the Fast Folding/Unfolding Transitions of Villin Headpiece Subdomain: Hierarchy and Heterogeneity.
    Mori T; Saito S
    J Phys Chem B; 2016 Nov; 120(45):11683-11691. PubMed ID: 27769115
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A novel folding pathway of the villin headpiece subdomain HP35.
    Wang E; Tao P; Wang J; Xiao Y
    Phys Chem Chem Phys; 2019 Aug; 21(33):18219-18226. PubMed ID: 31389931
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Free energy profile and mechanism of self-assembly of peptide amphiphiles based on a collective assembly coordinate.
    Yu T; Schatz GC
    J Phys Chem B; 2013 Aug; 117(30):9004-13. PubMed ID: 23822638
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Combine umbrella sampling with integrated tempering method for efficient and accurate calculation of free energy changes of complex energy surface.
    Yang M; Yang L; Gao Y; Hu H
    J Chem Phys; 2014 Jul; 141(4):044108. PubMed ID: 25084882
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein folding thermodynamics: a new computational approach.
    Chong SH; Ham S
    J Phys Chem B; 2014 May; 118(19):5017-25. PubMed ID: 24779395
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The fast-folding HP35 double mutant has a substantially reduced primary folding free energy barrier.
    Lei H; Deng X; Wang Z; Duan Y
    J Chem Phys; 2008 Oct; 129(15):155104. PubMed ID: 19045234
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Simple, yet powerful methodologies for conformational sampling of proteins.
    Harada R; Takano Y; Baba T; Shigeta Y
    Phys Chem Chem Phys; 2015 Mar; 17(9):6155-73. PubMed ID: 25659594
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.
    Fogolari F; Tosatto SC; Colombo G
    BMC Bioinformatics; 2005 Dec; 6():301. PubMed ID: 16354298
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Simulations of tryptophan fluorescence dynamics during folding of the villin headpiece.
    Tusell JR; Callis PR
    J Phys Chem B; 2012 Mar; 116(8):2586-94. PubMed ID: 22256973
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Secondary structure specific entropy change of a partially unfolded protein molecule.
    Sinha SK; Chakraborty S; Bandyopadhyay S
    Langmuir; 2010 Jun; 26(12):9911-6. PubMed ID: 20405863
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Pathway regulation mechanism revealed by cotranslational folding of villin headpiece subdomain HP35.
    Tao P; Wang E; Xiao Y
    Phys Rev E; 2020 May; 101(5-1):052403. PubMed ID: 32575289
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Adaptive Biasing Combined with Hamiltonian Replica Exchange to Improve Umbrella Sampling Free Energy Simulations.
    Zeller F; Zacharias M
    J Chem Theory Comput; 2014 Feb; 10(2):703-10. PubMed ID: 26580047
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Two-stage folding of HP-35 from ab initio simulations.
    Lei H; Duan Y
    J Mol Biol; 2007 Jun; 370(1):196-206. PubMed ID: 17512537
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Low folding cooperativity of HP35 revealed by single-molecule force spectroscopy and molecular dynamics simulation.
    Lv C; Tan C; Qin M; Zou D; Cao Y; Wang W
    Biophys J; 2012 Apr; 102(8):1944-51. PubMed ID: 22768951
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Conformational properties of glucose-based disaccharides investigated using molecular dynamics simulations with local elevation umbrella sampling.
    Perić-Hassler L; Hansen HS; Baron R; Hünenberger PH
    Carbohydr Res; 2010 Aug; 345(12):1781-801. PubMed ID: 20576257
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Microsecond scale replica exchange molecular dynamic simulation of villin headpiece: an insight into the folding landscape.
    Jani V; Sonavane UB; Joshi R
    J Biomol Struct Dyn; 2011 Jun; 28(6):845-60. PubMed ID: 21469746
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The early stage of folding of villin headpiece subdomain observed in a 200-nanosecond fully solvated molecular dynamics simulation.
    Duan Y; Wang L; Kollman PA
    Proc Natl Acad Sci U S A; 1998 Aug; 95(17):9897-902. PubMed ID: 9707572
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Parallel Cascade Selection Molecular Dynamics (PaCS-MD) to generate conformational transition pathway.
    Harada R; Kitao A
    J Chem Phys; 2013 Jul; 139(3):035103. PubMed ID: 23883057
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Potential Mean Force from Umbrella Sampling Simulations: What Can We Learn and What Is Missed?
    You W; Tang Z; Chang CA
    J Chem Theory Comput; 2019 Apr; 15(4):2433-2443. PubMed ID: 30811931
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.