129 related articles for article (PubMed ID: 27188396)
1. RNA motif search with data-driven element ordering.
Rampášek L; Jimenez RM; Lupták A; Vinař T; Brejová B
BMC Bioinformatics; 2016 May; 17(1):216. PubMed ID: 27188396
[TBL] [Abstract][Full Text] [Related]
2. A structure-based flexible search method for motifs in RNA.
Veksler-Lublinsky I; Ziv-Ukelson M; Barash D; Kedem K
J Comput Biol; 2007 Sep; 14(7):908-26. PubMed ID: 17803370
[TBL] [Abstract][Full Text] [Related]
3. Discovery of RNA motifs using a computational pipeline that allows insertions in paired regions and filtering of candidate sequences.
Jimenez RM; Rampášek L; Brejová B; Vinař T; Lupták A
Methods Mol Biol; 2012; 848():145-58. PubMed ID: 22315068
[TBL] [Abstract][Full Text] [Related]
4. CMfinder--a covariance model based RNA motif finding algorithm.
Yao Z; Weinberg Z; Ruzzo WL
Bioinformatics; 2006 Feb; 22(4):445-52. PubMed ID: 16357030
[TBL] [Abstract][Full Text] [Related]
5. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
Ji Y; Xu X; Stormo GD
Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926
[TBL] [Abstract][Full Text] [Related]
6. RNAMotifScanX: a graph alignment approach for RNA structural motif identification.
Zhong C; Zhang S
RNA; 2015 Mar; 21(3):333-46. PubMed ID: 25595715
[TBL] [Abstract][Full Text] [Related]
7. A cluster refinement algorithm for motif discovery.
Li G; Chan TM; Leung KS; Lee KH
IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(4):654-68. PubMed ID: 21030733
[TBL] [Abstract][Full Text] [Related]
8. IncMD: incremental trie-based structural motif discovery algorithm.
Badr G; Al-Turaiki I; Turcotte M; Mathkour H
J Bioinform Comput Biol; 2014 Oct; 12(5):1450027. PubMed ID: 25362841
[TBL] [Abstract][Full Text] [Related]
9. A speedup technique for (l, d)-motif finding algorithms.
Rajasekaran S; Dinh H
BMC Res Notes; 2011 Mar; 4():54. PubMed ID: 21385438
[TBL] [Abstract][Full Text] [Related]
10. Efficient algorithms for biological stems search.
Mi T; Rajasekaran S
BMC Bioinformatics; 2013 May; 14():161. PubMed ID: 23679045
[TBL] [Abstract][Full Text] [Related]
11. Locomotif: from graphical motif description to RNA motif search.
Reeder J; Reeder J; Giegerich R
Bioinformatics; 2007 Jul; 23(13):i392-400. PubMed ID: 17646322
[TBL] [Abstract][Full Text] [Related]
12. An algorithm for searching RNA motifs in genomic sequences.
Liu J; Ma B; Zhang K
Biomol Eng; 2007 Sep; 24(3):343-50. PubMed ID: 17482512
[TBL] [Abstract][Full Text] [Related]
13. Classification and assessment tools for structural motif discovery algorithms.
Badr G; Al-Turaiki I; Mathkour H
BMC Bioinformatics; 2013; 14 Suppl 9(Suppl 9):S4. PubMed ID: 23902564
[TBL] [Abstract][Full Text] [Related]
14. Identifying novel sequence variants of RNA 3D motifs.
Zirbel CL; Roll J; Sweeney BA; Petrov AI; Pirrung M; Leontis NB
Nucleic Acids Res; 2015 Sep; 43(15):7504-20. PubMed ID: 26130723
[TBL] [Abstract][Full Text] [Related]
15. Efficient sequential and parallel algorithms for finding edit distance based motifs.
Pal S; Xiao P; Rajasekaran S
BMC Genomics; 2016 Aug; 17 Suppl 4(Suppl 4):465. PubMed ID: 27557423
[TBL] [Abstract][Full Text] [Related]
16. RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach.
Pan X; Shen HB
BMC Bioinformatics; 2017 Feb; 18(1):136. PubMed ID: 28245811
[TBL] [Abstract][Full Text] [Related]
17. ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data.
Heller D; Krestel R; Ohler U; Vingron M; Marsico A
Nucleic Acids Res; 2017 Nov; 45(19):11004-11018. PubMed ID: 28977546
[TBL] [Abstract][Full Text] [Related]
18. smallWig: parallel compression of RNA-seq WIG files.
Wang Z; Weissman T; Milenkovic O
Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
[TBL] [Abstract][Full Text] [Related]
19. Searching RNA motifs and their intermolecular contacts with constraint networks.
Thébault P; de Givry S; Schiex T; Gaspin C
Bioinformatics; 2006 Sep; 22(17):2074-80. PubMed ID: 16820426
[TBL] [Abstract][Full Text] [Related]
20. Mining frequent stem patterns from unaligned RNA sequences.
Hamada M; Tsuda K; Kudo T; Kin T; Asai K
Bioinformatics; 2006 Oct; 22(20):2480-7. PubMed ID: 16908501
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
