These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data. Beck T; Morgan H; Blake A; Wells S; Hancock JM; Mallon AM BMC Bioinformatics; 2009 May; 10 Suppl 5(Suppl 5):S2. PubMed ID: 19426459 [TBL] [Abstract][Full Text] [Related]
3. The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. Fisher ME; Segerdell E; Matentzoglu N; Nenni MJ; Fortriede JD; Chu S; Pells TJ; Osumi-Sutherland D; Chaturvedi P; James-Zorn C; Sundararaj N; Lotay VS; Ponferrada V; Wang DZ; Kim E; Agalakov S; Arshinoff BI; Karimi K; Vize PD; Zorn AM BMC Bioinformatics; 2022 Mar; 23(1):99. PubMed ID: 35317743 [TBL] [Abstract][Full Text] [Related]
4. Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology. Hoehndorf R; Harris MA; Herre H; Rustici G; Gkoutos GV Bioinformatics; 2012 Jul; 28(13):1783-9. PubMed ID: 22539675 [TBL] [Abstract][Full Text] [Related]
5. MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions. Blank CE; Cui H; Moore LR; Walls RL J Biomed Semantics; 2016; 7():18. PubMed ID: 27076900 [TBL] [Abstract][Full Text] [Related]
6. The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Köhler S; Doelken SC; Mungall CJ; Bauer S; Firth HV; Bailleul-Forestier I; Black GC; Brown DL; Brudno M; Campbell J; FitzPatrick DR; Eppig JT; Jackson AP; Freson K; Girdea M; Helbig I; Hurst JA; Jähn J; Jackson LG; Kelly AM; Ledbetter DH; Mansour S; Martin CL; Moss C; Mumford A; Ouwehand WH; Park SM; Riggs ER; Scott RH; Sisodiya S; Van Vooren S; Wapner RJ; Wilkie AO; Wright CF; Vulto-van Silfhout AT; de Leeuw N; de Vries BB; Washingthon NL; Smith CL; Westerfield M; Schofield P; Ruef BJ; Gkoutos GV; Haendel M; Smedley D; Lewis SE; Robinson PN Nucleic Acids Res; 2014 Jan; 42(Database issue):D966-74. PubMed ID: 24217912 [TBL] [Abstract][Full Text] [Related]
7. Cellular phenotype database: a repository for systems microscopy data. Kirsanova C; Brazma A; Rustici G; Sarkans U Bioinformatics; 2015 Aug; 31(16):2736-40. PubMed ID: 25861964 [TBL] [Abstract][Full Text] [Related]
8. Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung. Pan H; Deutsch GH; Wert SE; ; J Biomed Semantics; 2019 Oct; 10(1):18. PubMed ID: 31651362 [TBL] [Abstract][Full Text] [Related]
9. Aber-OWL: a framework for ontology-based data access in biology. Hoehndorf R; Slater L; Schofield PN; Gkoutos GV BMC Bioinformatics; 2015 Jan; 16():26. PubMed ID: 25627673 [TBL] [Abstract][Full Text] [Related]
10. The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. Hoehndorf R; Alshahrani M; Gkoutos GV; Gosline G; Groom Q; Hamann T; Kattge J; de Oliveira SM; Schmidt M; Sierra S; Smets E; Vos RA; Weiland C J Biomed Semantics; 2016 Nov; 7(1):65. PubMed ID: 27842607 [TBL] [Abstract][Full Text] [Related]
11. Linking human diseases to animal models using ontology-based phenotype annotation. Washington NL; Haendel MA; Mungall CJ; Ashburner M; Westerfield M; Lewis SE PLoS Biol; 2009 Nov; 7(11):e1000247. PubMed ID: 19956802 [TBL] [Abstract][Full Text] [Related]
12. FYPO: the fission yeast phenotype ontology. Harris MA; Lock A; Bähler J; Oliver SG; Wood V Bioinformatics; 2013 Jul; 29(13):1671-8. PubMed ID: 23658422 [TBL] [Abstract][Full Text] [Related]
13. The Human Phenotype Ontology in 2017. Köhler S; Vasilevsky NA; Engelstad M; Foster E; McMurry J; Aymé S; Baynam G; Bello SM; Boerkoel CF; Boycott KM; Brudno M; Buske OJ; Chinnery PF; Cipriani V; Connell LE; Dawkins HJ; DeMare LE; Devereau AD; de Vries BB; Firth HV; Freson K; Greene D; Hamosh A; Helbig I; Hum C; Jähn JA; James R; Krause R; F Laulederkind SJ; Lochmüller H; Lyon GJ; Ogishima S; Olry A; Ouwehand WH; Pontikos N; Rath A; Schaefer F; Scott RH; Segal M; Sergouniotis PI; Sever R; Smith CL; Straub V; Thompson R; Turner C; Turro E; Veltman MW; Vulliamy T; Yu J; von Ziegenweidt J; Zankl A; Züchner S; Zemojtel T; Jacobsen JO; Groza T; Smedley D; Mungall CJ; Haendel M; Robinson PN Nucleic Acids Res; 2017 Jan; 45(D1):D865-D876. PubMed ID: 27899602 [TBL] [Abstract][Full Text] [Related]
14. Incentivising use of structured language in biological descriptions: Author-driven phenotype data and ontology production. Cui H; Macklin JA; Sachs J; Reznicek A; Starr J; Ford B; Penev L; Chen HL Biodivers Data J; 2018; (6):e29616. PubMed ID: 30473620 [TBL] [Abstract][Full Text] [Related]
15. OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction. Smaili FZ; Gao X; Hoehndorf R Bioinformatics; 2019 Jun; 35(12):2133-2140. PubMed ID: 30407490 [TBL] [Abstract][Full Text] [Related]
16. The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Cooper L; Meier A; Laporte MA; Elser JL; Mungall C; Sinn BT; Cavaliere D; Carbon S; Dunn NA; Smith B; Qu B; Preece J; Zhang E; Todorovic S; Gkoutos G; Doonan JH; Stevenson DW; Arnaud E; Jaiswal P Nucleic Acids Res; 2018 Jan; 46(D1):D1168-D1180. PubMed ID: 29186578 [TBL] [Abstract][Full Text] [Related]
18. HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology. Shen F; Peng S; Fan Y; Wen A; Liu S; Wang Y; Wang L; Liu H J Biomed Inform; 2019 Aug; 96():103246. PubMed ID: 31255713 [TBL] [Abstract][Full Text] [Related]
19. Ontology-based semantic mapping of chemical toxicities. Wang RL; Edwards S; Ives C Toxicology; 2019 Jan; 412():89-100. PubMed ID: 30468866 [TBL] [Abstract][Full Text] [Related]
20. Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis. Wu TJ; Schriml LM; Chen QR; Colbert M; Crichton DJ; Finney R; Hu Y; Kibbe WA; Kincaid H; Meerzaman D; Mitraka E; Pan Y; Smith KM; Srivastava S; Ward S; Yan C; Mazumder R Database (Oxford); 2015; 2015():bav032. PubMed ID: 25841438 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]