201 related articles for article (PubMed ID: 27209446)
1. Targeted virus detection in next-generation sequencing data using an automated e-probe based approach.
Visser M; Burger JT; Maree HJ
Virology; 2016 Aug; 495():122-8. PubMed ID: 27209446
[TBL] [Abstract][Full Text] [Related]
2. In Silico Probe-Based Detection of Citrus Viruses in NGS Data.
Jooste TL; Visser M; Cook G; Burger JT; Maree HJ
Phytopathology; 2017 Aug; 107(8):988-993. PubMed ID: 28562184
[TBL] [Abstract][Full Text] [Related]
3. Current impact and future directions of high throughput sequencing in plant virus diagnostics.
Massart S; Olmos A; Jijakli H; Candresse T
Virus Res; 2014 Aug; 188():90-6. PubMed ID: 24717426
[TBL] [Abstract][Full Text] [Related]
4. Metagenomic next-generation sequencing of viruses infecting grapevines.
Burger JT; Maree HJ
Methods Mol Biol; 2015; 1302():315-30. PubMed ID: 25981264
[TBL] [Abstract][Full Text] [Related]
5. Comparison of Next-Generation Sequencing Versus Biological Indexing for the Optimal Detection of Viral Pathogens in Grapevine.
Al Rwahnih M; Daubert S; Golino D; Islas C; Rowhani A
Phytopathology; 2015 Jun; 105(6):758-63. PubMed ID: 25689518
[TBL] [Abstract][Full Text] [Related]
6. Deep sequencing for discovery and evolutionary analysis of plant viruses.
Roossinck MJ
Virus Res; 2017 Jul; 239():82-86. PubMed ID: 27876625
[TBL] [Abstract][Full Text] [Related]
7. Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus.
Jo Y; Choi H; Kim SM; Kim SL; Lee BC; Cho WK
BMC Genomics; 2016 Aug; 17():579. PubMed ID: 27507588
[TBL] [Abstract][Full Text] [Related]
8. E-probe Diagnostic Nucleic acid Analysis (EDNA): a theoretical approach for handling of next generation sequencing data for diagnostics.
Stobbe AH; Daniels J; Espindola AS; Verma R; Melcher U; Ochoa-Corona F; Garzon C; Fletcher J; Schneider W
J Microbiol Methods; 2013 Sep; 94(3):356-66. PubMed ID: 23867249
[TBL] [Abstract][Full Text] [Related]
9. Virus detection in high-throughput sequencing data without a reference genome of the host.
Kruppa J; Jo WK; van der Vries E; Ludlow M; Osterhaus A; Baumgaertner W; Jung K
Infect Genet Evol; 2018 Dec; 66():180-187. PubMed ID: 30292006
[TBL] [Abstract][Full Text] [Related]
10. Methods in virus diagnostics: from ELISA to next generation sequencing.
Boonham N; Kreuze J; Winter S; van der Vlugt R; Bergervoet J; Tomlinson J; Mumford R
Virus Res; 2014 Jun; 186():20-31. PubMed ID: 24361981
[TBL] [Abstract][Full Text] [Related]
11. drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes.
Lin HH; Liao YC
Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369462
[TBL] [Abstract][Full Text] [Related]
12. VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
Wagner DD; Marine RL; Ramos E; Ng TFF; Castro CJ; Okomo-Adhiambo M; Harvey K; Doho G; Kelly R; Jain Y; Tatusov RL; Silva H; Rota PA; Khan AN; Oberste MS
Microbiol Spectr; 2022 Apr; 10(2):e0256421. PubMed ID: 35234489
[TBL] [Abstract][Full Text] [Related]
13. Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated
Brinkmann A; Andrusch A; Belka A; Wylezich C; Höper D; Pohlmann A; Nordahl Petersen T; Lucas P; Blanchard Y; Papa A; Melidou A; Oude Munnink BB; Matthijnssens J; Deboutte W; Ellis RJ; Hansmann F; Baumgärtner W; van der Vries E; Osterhaus A; Camma C; Mangone I; Lorusso A; Marcacci M; Nunes A; Pinto M; Borges V; Kroneman A; Schmitz D; Corman VM; Drosten C; Jones TC; Hendriksen RS; Aarestrup FM; Koopmans M; Beer M; Nitsche A
J Clin Microbiol; 2019 Aug; 57(8):. PubMed ID: 31167846
[TBL] [Abstract][Full Text] [Related]
14. VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs.
Zheng Y; Gao S; Padmanabhan C; Li R; Galvez M; Gutierrez D; Fuentes S; Ling KS; Kreuze J; Fei Z
Virology; 2017 Jan; 500():130-138. PubMed ID: 27825033
[TBL] [Abstract][Full Text] [Related]
15. Bioinformatic Tools and Genome Analysis of Citrus tristeza virus.
Ruiz-García AB; Bester R; Olmos A; Maree HJ
Methods Mol Biol; 2019; 2015():163-178. PubMed ID: 31222703
[TBL] [Abstract][Full Text] [Related]
16. Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples.
Lin J; Kramna L; Autio R; Hyöty H; Nykter M; Cinek O
BMC Genomics; 2017 May; 18(1):378. PubMed ID: 28506246
[TBL] [Abstract][Full Text] [Related]
17. Kodoja: A workflow for virus detection in plants using k-mer analysis of RNA-sequencing data.
Baizan-Edge A; Cock P; MacFarlane S; McGavin W; Torrance L; Jones S
J Gen Virol; 2019 Mar; 100(3):533-542. PubMed ID: 30676315
[TBL] [Abstract][Full Text] [Related]
18. VirusSeeker, a computational pipeline for virus discovery and virome composition analysis.
Zhao G; Wu G; Lim ES; Droit L; Krishnamurthy S; Barouch DH; Virgin HW; Wang D
Virology; 2017 Mar; 503():21-30. PubMed ID: 28110145
[TBL] [Abstract][Full Text] [Related]
19. Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Skums P; Artyomenko A; Glebova O; Ramachandran S; Mandoiu I; Campo DS; Dimitrova Z; Zelikovsky A; Khudyakov Y
Bioinformatics; 2015 Mar; 31(5):682-90. PubMed ID: 25359889
[TBL] [Abstract][Full Text] [Related]
20. SNVerGUI: a desktop tool for variant analysis of next-generation sequencing data.
Wang W; Hu W; Hou F; Hu P; Wei Z
J Med Genet; 2012 Dec; 49(12):753-5. PubMed ID: 23024288
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]