494 related articles for article (PubMed ID: 27238636)
1. metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data.
Louvel G; Der Sarkissian C; Hanghøj K; Orlando L
Mol Ecol Resour; 2016 Nov; 16(6):1415-1427. PubMed ID: 27238636
[TBL] [Abstract][Full Text] [Related]
2. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
Staley C; Sadowsky MJ
J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
[TBL] [Abstract][Full Text] [Related]
3. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
4. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
Keegan KP; Glass EM; Meyer F
Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
[TBL] [Abstract][Full Text] [Related]
5. Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists.
Jo J; Oh J; Park C
J Microbiol; 2020 Mar; 58(3):176-192. PubMed ID: 32108314
[TBL] [Abstract][Full Text] [Related]
6. WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data.
Devlin JC; Battaglia T; Blaser MJ; Ruggles KV
BMC Genomics; 2018 Jun; 19(1):493. PubMed ID: 29940835
[TBL] [Abstract][Full Text] [Related]
7. Shotgun microbial profiling of fossil remains.
Der Sarkissian C; Ermini L; Jónsson H; Alekseev AN; Crubezy E; Shapiro B; Orlando L
Mol Ecol; 2014 Apr; 23(7):1780-98. PubMed ID: 24612293
[TBL] [Abstract][Full Text] [Related]
8. Metagenomics using next-generation sequencing.
Bragg L; Tyson GW
Methods Mol Biol; 2014; 1096():183-201. PubMed ID: 24515370
[TBL] [Abstract][Full Text] [Related]
9. Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches.
Logares R; Haverkamp TH; Kumar S; Lanzén A; Nederbragt AJ; Quince C; Kauserud H
J Microbiol Methods; 2012 Oct; 91(1):106-13. PubMed ID: 22849829
[TBL] [Abstract][Full Text] [Related]
10. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
[TBL] [Abstract][Full Text] [Related]
11. BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS.
Fosso B; Santamaria M; Marzano M; Alonso-Alemany D; Valiente G; Donvito G; Monaco A; Notarangelo P; Pesole G
BMC Bioinformatics; 2015 Jul; 16():203. PubMed ID: 26130132
[TBL] [Abstract][Full Text] [Related]
12. ViromeScan: a new tool for metagenomic viral community profiling.
Rampelli S; Soverini M; Turroni S; Quercia S; Biagi E; Brigidi P; Candela M
BMC Genomics; 2016 Mar; 17():165. PubMed ID: 26932765
[TBL] [Abstract][Full Text] [Related]
13. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
[TBL] [Abstract][Full Text] [Related]
14. High throughput sequencing methods and analysis for microbiome research.
Di Bella JM; Bao Y; Gloor GB; Burton JP; Reid G
J Microbiol Methods; 2013 Dec; 95(3):401-14. PubMed ID: 24029734
[TBL] [Abstract][Full Text] [Related]
15. Metagenomic approaches in microbial ecology: an update on whole-genome and marker gene sequencing analyses.
Pérez-Cobas AE; Gomez-Valero L; Buchrieser C
Microb Genom; 2020 Aug; 6(8):. PubMed ID: 32706331
[TBL] [Abstract][Full Text] [Related]
16. Assessment of REPLI-g Multiple Displacement Whole Genome Amplification (WGA) Techniques for Metagenomic Applications.
Ahsanuddin S; Afshinnekoo E; Gandara J; Hakyemezoğlu M; Bezdan D; Minot S; Greenfield N; Mason CE
J Biomol Tech; 2017 Apr; 28(1):46-55. PubMed ID: 28344519
[TBL] [Abstract][Full Text] [Related]
17. Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis.
Ai D; Huang R; Wen J; Li C; Zhu J; Xia LC
BMC Genomics; 2017 Jan; 18(Suppl 1):1041. PubMed ID: 28198672
[TBL] [Abstract][Full Text] [Related]
18. An efficient method for high molecular weight bacterial DNA extraction suitable for shotgun metagenomics from skin swabs.
Serghiou IR; Baker D; Evans R; Dalby MJ; Kiu R; Trampari E; Phillips S; Watt R; Atkinson T; Murphy B; Hall LJ; Webber MA
Microb Genom; 2023 Jul; 9(7):. PubMed ID: 37428148
[TBL] [Abstract][Full Text] [Related]
19. MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples.
LaPierre N; Mangul S; Alser M; Mandric I; Wu NC; Koslicki D; Eskin E
BMC Genomics; 2019 Jun; 20(Suppl 5):423. PubMed ID: 31167634
[TBL] [Abstract][Full Text] [Related]
20. Comparative Metagenomics.
Maltez Thomas A; Prata Lima F; Maria Silva Moura L; Maria da Silva A; Dias-Neto E; Setubal JC
Methods Mol Biol; 2018; 1704():243-260. PubMed ID: 29277868
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
