BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

348 related articles for article (PubMed ID: 27250330)

  • 1. Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations.
    Pabit SA; Katz AM; Tolokh IS; Drozdetski A; Baker N; Onufriev AV; Pollack L
    J Chem Phys; 2016 May; 144(20):205102. PubMed ID: 27250330
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids.
    Nguyen HT; Pabit SA; Meisburger SP; Pollack L; Case DA
    J Chem Phys; 2014 Dec; 141(22):22D508. PubMed ID: 25494779
    [TBL] [Abstract][Full Text] [Related]  

  • 3. All-Atom MD Simulation of DNA Condensation Using Ab Initio Derived Force Field Parameters of Cobalt(III)-Hexammine.
    Sun T; Mirzoev A; Korolev N; Lyubartsev AP; Nordenskiöld L
    J Phys Chem B; 2017 Aug; 121(33):7761-7770. PubMed ID: 28746805
    [TBL] [Abstract][Full Text] [Related]  

  • 4. What Can We Learn from Wide-Angle Solution Scattering?
    Wang Y; Zhou H; Onuk E; Badger J; Makowski L
    Adv Exp Med Biol; 2017; 1009():131-147. PubMed ID: 29218557
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Hybrid Methods for Modeling Protein Structures Using Molecular Dynamics Simulations and Small-Angle X-Ray Scattering Data.
    Ekimoto T; Ikeguchi M
    Adv Exp Med Biol; 2018; 1105():237-258. PubMed ID: 30617833
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structural Characterization of Nucleic Acid Nanoparticles Using SAXS and SAXS-Driven MD.
    Byrnes J; Chopra K; Rolband LA; Danai L; Chodankar S; Yang L; Afonin KA
    Methods Mol Biol; 2023; 2709():65-94. PubMed ID: 37572273
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Validating solution ensembles from molecular dynamics simulation by wide-angle X-ray scattering data.
    Chen PC; Hub JS
    Biophys J; 2014 Jul; 107(2):435-447. PubMed ID: 25028885
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs.
    Doniach S; Lipfert J
    Methods Enzymol; 2009; 469():237-51. PubMed ID: 20946792
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Atomic-resolution structural information from scattering experiments on macromolecules in solution.
    Köfinger J; Hummer G
    Phys Rev E Stat Nonlin Soft Matter Phys; 2013 May; 87(5):052712. PubMed ID: 23767571
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Interpreting SAXS/WAXS Data with Explicit-Solvent Simulations: A Practical Guide.
    Hermann MR; Hub JS
    Methods Mol Biol; 2020; 2168():199-215. PubMed ID: 33582993
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Characterization of proteins with wide-angle X-ray solution scattering (WAXS).
    Makowski L
    J Struct Funct Genomics; 2010 Mar; 11(1):9-19. PubMed ID: 20049539
    [TBL] [Abstract][Full Text] [Related]  

  • 12. WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics.
    Knight CJ; Hub JS
    Nucleic Acids Res; 2015 Jul; 43(W1):W225-30. PubMed ID: 25855813
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Enzymatic Degradation of DNA Probed by
    Krishnamoorthy K; Kewalramani S; Ehlen A; Moreau LM; Mirkin CA; Olvera de la Cruz M; Bedzyk MJ
    ACS Nano; 2019 Oct; 13(10):11382-11391. PubMed ID: 31513370
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Interpreting solution X-ray scattering data using molecular simulations.
    Hub JS
    Curr Opin Struct Biol; 2018 Apr; 49():18-26. PubMed ID: 29172147
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering.
    Cho HS; Dashdorj N; Schotte F; Graber T; Henning R; Anfinrud P
    Proc Natl Acad Sci U S A; 2010 Apr; 107(16):7281-6. PubMed ID: 20406909
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Predicting X-ray solution scattering from flexible macromolecules.
    Zhou H; Guterres H; Mattos C; Makowski L
    Protein Sci; 2018 Dec; 27(12):2023-2036. PubMed ID: 30230663
    [TBL] [Abstract][Full Text] [Related]  

  • 17. High-performance small- and wide-angle X-ray scattering (SAXS/WAXS) experiments on a multi-functional laboratory goniometer platform with easily exchangeable X-ray modules.
    Bolze J; Kogan V; Beckers D; Fransen M
    Rev Sci Instrum; 2018 Aug; 89(8):085115. PubMed ID: 30184636
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Tracking the structural dynamics of proteins with time-resolved X-ray solution scattering.
    Pounot K; Schirò G; Levantino M
    Curr Opin Struct Biol; 2023 Oct; 82():102661. PubMed ID: 37536065
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Simultaneous small- and wide-angle scattering at high X-ray energies.
    Daniels JE; Pontoni D; Hoo RP; Honkimäki V
    J Synchrotron Radiat; 2010 Jul; 17(4):473-8. PubMed ID: 20567079
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Counterion distribution surrounding spherical nucleic acid-Au nanoparticle conjugates probed by small-angle x-ray scattering.
    Kewalramani S; Zwanikken JW; Macfarlane RJ; Leung CY; Olvera de la Cruz M; Mirkin CA; Bedzyk MJ
    ACS Nano; 2013 Dec; 7(12):11301-9. PubMed ID: 24251367
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.