These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 27251549)

  • 1. Data-directed RNA secondary structure prediction using probabilistic modeling.
    Deng F; Ledda M; Vaziri S; Aviran S
    RNA; 2016 Aug; 22(8):1109-19. PubMed ID: 27251549
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data.
    Wu Y; Shi B; Ding X; Liu T; Hu X; Yip KY; Yang ZR; Mathews DH; Lu ZJ
    Nucleic Acids Res; 2015 Sep; 43(15):7247-59. PubMed ID: 26170232
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction.
    Sahoo S; Świtnicki MP; Pedersen JS
    Bioinformatics; 2016 Sep; 32(17):2626-35. PubMed ID: 27153612
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Computational analysis of RNA structures with chemical probing data.
    Ge P; Zhang S
    Methods; 2015 Jun; 79-80():60-6. PubMed ID: 25687190
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB; Woods DA; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNA secondary structure prediction based on SHAPE data in helix regions.
    Lotfi M; Zare-Mirakabad F; Montaseri S
    J Theor Biol; 2015 Sep; 380():178-82. PubMed ID: 26037307
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computational analysis of conserved RNA secondary structure in transcriptomes and genomes.
    Eddy SR
    Annu Rev Biophys; 2014; 43():433-56. PubMed ID: 24895857
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data.
    Montaseri S; Ganjtabesh M; Zare-Mirakabad F
    PLoS One; 2016; 11(11):e0166965. PubMed ID: 27893832
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Statistical and Bayesian approaches to RNA secondary structure prediction.
    Ding Y
    RNA; 2006 Mar; 12(3):323-31. PubMed ID: 16495231
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Probing-directed identification of novel structured RNAs.
    Vinogradova SV; Sutormin RA; Mironov AA; Soldatov RA
    RNA Biol; 2016; 13(2):232-42. PubMed ID: 26732206
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution.
    Kutchko KM; Laederach A
    Wiley Interdiscip Rev RNA; 2017 Jan; 8(1):. PubMed ID: 27396578
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
    Sükösd Z; Swenson MS; Kjems J; Heitsch CE
    Nucleic Acids Res; 2013 Mar; 41(5):2807-16. PubMed ID: 23325843
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.
    Dowell RD; Eddy SR
    BMC Bioinformatics; 2004 Jun; 5():71. PubMed ID: 15180907
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Toward a next-generation atlas of RNA secondary structure.
    Bai Y; Dai X; Harrison A; Johnston C; Chen M
    Brief Bioinform; 2016 Jan; 17(1):63-77. PubMed ID: 25922372
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SHAPE-directed RNA secondary structure prediction.
    Low JT; Weeks KM
    Methods; 2010 Oct; 52(2):150-8. PubMed ID: 20554050
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Secondary structure prediction of interacting RNA molecules.
    Andronescu M; Zhang ZC; Condon A
    J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improving RNA secondary structure prediction with structure mapping data.
    Sloma MF; Mathews DH
    Methods Enzymol; 2015; 553():91-114. PubMed ID: 25726462
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNA secondary structure prediction from multi-aligned sequences.
    Hamada M
    Methods Mol Biol; 2015; 1269():17-38. PubMed ID: 25577370
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Understanding in-line probing experiments by modeling cleavage of nonreactive RNA nucleotides.
    Mlýnský V; Bussi G
    RNA; 2017 May; 23(5):712-720. PubMed ID: 28202709
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ShapeSorter: a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence.
    Tsybulskyi V; Meyer IM
    Nucleic Acids Res; 2022 Aug; 50(15):e85. PubMed ID: 35641016
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.