140 related articles for article (PubMed ID: 27259539)
21. Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers.
Girardot C; Scholtalbers J; Sauer S; Su SY; Furlong EE
BMC Bioinformatics; 2016 Oct; 17(1):419. PubMed ID: 27717304
[TBL] [Abstract][Full Text] [Related]
22. TruSPAdes: barcode assembly of TruSeq synthetic long reads.
Bankevich A; Pevzner PA
Nat Methods; 2016 Mar; 13(3):248-50. PubMed ID: 26828418
[TBL] [Abstract][Full Text] [Related]
23. Bartender: a fast and accurate clustering algorithm to count barcode reads.
Zhao L; Liu Z; Levy SF; Wu S
Bioinformatics; 2018 Mar; 34(5):739-747. PubMed ID: 29069318
[TBL] [Abstract][Full Text] [Related]
24. LSCplus: a fast solution for improving long read accuracy by short read alignment.
Hu R; Sun G; Sun X
BMC Bioinformatics; 2016 Nov; 17(1):451. PubMed ID: 27829364
[TBL] [Abstract][Full Text] [Related]
25. Starcode: sequence clustering based on all-pairs search.
Zorita E; Cuscó P; Filion GJ
Bioinformatics; 2015 Jun; 31(12):1913-9. PubMed ID: 25638815
[TBL] [Abstract][Full Text] [Related]
26. HycDemux: a hybrid unsupervised approach for accurate barcoded sample demultiplexing in nanopore sequencing.
Han R; Qi J; Xue Y; Sun X; Zhang F; Gao X; Li G
Genome Biol; 2023 Oct; 24(1):222. PubMed ID: 37798751
[TBL] [Abstract][Full Text] [Related]
27. Identification and quantification of chimeric sequencing reads in a highly multiplexed RAD-seq protocol.
Martin Cerezo ML; Raval R; de Haro Reyes B; Kucka M; Chan FY; Bryk J
Mol Ecol Resour; 2022 Nov; 22(8):2860-2870. PubMed ID: 35668693
[TBL] [Abstract][Full Text] [Related]
28. PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment.
Yeh CC; Amorosi CJ; Showman S; Dunham MJ
Bioinformatics; 2022 May; 38(10):2927-2929. PubMed ID: 35561209
[TBL] [Abstract][Full Text] [Related]
29. RACER: Rapid and accurate correction of errors in reads.
Ilie L; Molnar M
Bioinformatics; 2013 Oct; 29(19):2490-3. PubMed ID: 23853064
[TBL] [Abstract][Full Text] [Related]
30. Best Practices in Designing, Sequencing, and Identifying Random DNA Barcodes.
Johnson MS; Venkataram S; Kryazhimskiy S
J Mol Evol; 2023 Jun; 91(3):263-280. PubMed ID: 36651964
[TBL] [Abstract][Full Text] [Related]
31. Reducing amplification artifacts in high multiplex amplicon sequencing by using molecular barcodes.
Peng Q; Vijaya Satya R; Lewis M; Randad P; Wang Y
BMC Genomics; 2015 Aug; 16(1):589. PubMed ID: 26248467
[TBL] [Abstract][Full Text] [Related]
32. LAMSA: fast split read alignment with long approximate matches.
Liu B; Gao Y; Wang Y
Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
[TBL] [Abstract][Full Text] [Related]
33. PEAR: a fast and accurate Illumina Paired-End reAd mergeR.
Zhang J; Kobert K; Flouri T; Stamatakis A
Bioinformatics; 2014 Mar; 30(5):614-20. PubMed ID: 24142950
[TBL] [Abstract][Full Text] [Related]
34. A method for multiplexed full-length single-molecule sequencing of the human mitochondrial genome.
Keraite I; Becker P; Canevazzi D; Frias-López C; Dabad M; Tonda-Hernandez R; Paramonov I; Ingham MJ; Brun-Heath I; Leno J; Abulí A; Garcia-Arumí E; Heath SC; Gut M; Gut IG
Nat Commun; 2022 Oct; 13(1):5902. PubMed ID: 36202811
[TBL] [Abstract][Full Text] [Related]
35. Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies.
van der Valk T; Vezzi F; Ormestad M; Dalén L; Guschanski K
Mol Ecol Resour; 2020 Sep; 20(5):1171-1181. PubMed ID: 30848092
[TBL] [Abstract][Full Text] [Related]
36. When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.
Lonardi S; Mirebrahim H; Wanamaker S; Alpert M; Ciardo G; Duma D; Close TJ
Bioinformatics; 2015 Sep; 31(18):2972-80. PubMed ID: 25995232
[TBL] [Abstract][Full Text] [Related]
37. Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies.
Kong Y
Genomics; 2011 Aug; 98(2):152-3. PubMed ID: 21651976
[TBL] [Abstract][Full Text] [Related]
38. AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads.
Criscuolo A; Brisse S
Genomics; 2013; 102(5-6):500-6. PubMed ID: 23912058
[TBL] [Abstract][Full Text] [Related]
39. Blue: correcting sequencing errors using consensus and context.
Greenfield P; Duesing K; Papanicolaou A; Bauer DC
Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879
[TBL] [Abstract][Full Text] [Related]
40. BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing.
Somervuo P; Koskinen P; Mei P; Holm L; Auvinen P; Paulin L
BMC Bioinformatics; 2018 Jul; 19(1):257. PubMed ID: 29976145
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
