BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

177 related articles for article (PubMed ID: 27302888)

  • 1. CONSTANd : A Normalization Method for Isobaric Labeled Spectra by Constrained Optimization.
    Maes E; Hadiwikarta WW; Mertens I; Baggerman G; Hooyberghs J; Valkenborg D
    Mol Cell Proteomics; 2016 Aug; 15(8):2779-90. PubMed ID: 27302888
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Isobaric labeling and data normalization without requiring protein quantitation.
    Kim PD; Patel BB; Yeung AT
    J Biomol Tech; 2012 Apr; 23(1):11-23. PubMed ID: 22468137
    [TBL] [Abstract][Full Text] [Related]  

  • 3. IsobariQ: software for isobaric quantitative proteomics using IPTL, iTRAQ, and TMT.
    Arntzen MØ; Koehler CJ; Barsnes H; Berven FS; Treumann A; Thiede B
    J Proteome Res; 2011 Feb; 10(2):913-20. PubMed ID: 21067241
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Dissecting the iTRAQ Data Analysis.
    Aggarwal S; Yadav AK
    Methods Mol Biol; 2016; 1362():277-91. PubMed ID: 26519184
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Measuring and managing ratio compression for accurate iTRAQ/TMT quantification.
    Savitski MM; Mathieson T; Zinn N; Sweetman G; Doce C; Becher I; Pachl F; Kuster B; Bantscheff M
    J Proteome Res; 2013 Aug; 12(8):3586-98. PubMed ID: 23768245
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Limits for Resolving Isobaric Tandem Mass Tag Reporter Ions Using Phase-Constrained Spectrum Deconvolution.
    Kelstrup CD; Aizikov K; Batth TS; Kreutzman A; Grinfeld D; Lange O; Mourad D; Makarov AA; Olsen JV
    J Proteome Res; 2018 Nov; 17(11):4008-4016. PubMed ID: 30220210
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An Adaptive Pipeline To Maximize Isobaric Tagging Data in Large-Scale MS-Based Proteomics.
    Corthésy J; Theofilatos K; Mavroudi S; Macron C; Cominetti O; Remlawi M; Ferraro F; Núñez Galindo A; Kussmann M; Likothanassis S; Dayon L
    J Proteome Res; 2018 Jun; 17(6):2165-2173. PubMed ID: 29695160
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.
    Li Z; Adams RM; Chourey K; Hurst GB; Hettich RL; Pan C
    J Proteome Res; 2012 Mar; 11(3):1582-90. PubMed ID: 22188275
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Relative Protein Quantification Using Tandem Mass Tag Mass Spectrometry.
    Zhang L; Elias JE
    Methods Mol Biol; 2017; 1550():185-198. PubMed ID: 28188531
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Evaluation of a Dual Isolation Width Acquisition Method for Isobaric Labeling Ratio Decompression.
    Roumeliotis TI; Weisser H; Choudhary JS
    J Proteome Res; 2019 Mar; 18(3):1433-1440. PubMed ID: 30576155
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Trends in the Design of New Isobaric Labeling Reagents for Quantitative Proteomics.
    Bąchor R; Waliczek M; Stefanowicz P; Szewczuk Z
    Molecules; 2019 Feb; 24(4):. PubMed ID: 30781343
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Estimating influence of cofragmentation on peptide quantification and identification in iTRAQ experiments by simulating multiplexed spectra.
    Li H; Hwang KB; Mun DG; Kim H; Lee H; Lee SW; Paek E
    J Proteome Res; 2014 Jul; 13(7):3488-97. PubMed ID: 24918111
    [TBL] [Abstract][Full Text] [Related]  

  • 13. QCQuan: A Web Tool for the Automated Assessment of Protein Expression and Data Quality of Labeled Mass Spectrometry Experiments.
    Van Houtven J; Agten A; Boonen K; Baggerman G; Hooyberghs J; Laukens K; Valkenborg D
    J Proteome Res; 2019 May; 18(5):2221-2227. PubMed ID: 30942071
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Development and characterization of novel 8-plex DiLeu isobaric labels for quantitative proteomics and peptidomics.
    Frost DC; Greer T; Xiang F; Liang Z; Li L
    Rapid Commun Mass Spectrom; 2015 Jun; 29(12):1115-24. PubMed ID: 25981542
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments.
    Ahrné E; Glatter T; Viganò C; Schubert Cv; Nigg EA; Schmidt A
    J Proteome Res; 2016 Aug; 15(8):2537-47. PubMed ID: 27345528
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Analysis of Reproducibility of Proteome Coverage and Quantitation Using Isobaric Mass Tags (iTRAQ and TMT).
    Casey TM; Khan JM; Bringans SD; Koudelka T; Takle PS; Downs RA; Livk A; Syme RA; Tan KC; Lipscombe RJ
    J Proteome Res; 2017 Feb; 16(2):384-392. PubMed ID: 28152591
    [TBL] [Abstract][Full Text] [Related]  

  • 17. TomahaqCompanion: A Tool for the Creation and Analysis of Isobaric Label Based Multiplexed Targeted Assays.
    Rose CM; Erickson BK; Schweppe DK; Viner R; Choi J; Rogers J; Bomgarden R; Gygi SP; Kirkpatrick DS
    J Proteome Res; 2019 Feb; 18(2):594-605. PubMed ID: 30501201
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improved reporter ion assignment of raw isobaric stable isotope labeled liquid chromatography/matrix-assisted laser desorption/ionization tandem time-of-flight mass spectral data for quantitative proteomics.
    Jakoby T; Tholey A; van den Berg BH
    Rapid Commun Mass Spectrom; 2012 Dec; 26(23):2777-85. PubMed ID: 23124669
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Determination of variation parameters as a crucial step in designing TMT-based clinical proteomics experiments.
    Maes E; Valkenborg D; Baggerman G; Willems H; Landuyt B; Schoofs L; Mertens I
    PLoS One; 2015; 10(3):e0120115. PubMed ID: 25775046
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Clinical biomarker discovery by SWATH-MS based label-free quantitative proteomics: impact of criteria for identification of differentiators and data normalization method.
    Narasimhan M; Kannan S; Chawade A; Bhattacharjee A; Govekar R
    J Transl Med; 2019 May; 17(1):184. PubMed ID: 31151397
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.