BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

221 related articles for article (PubMed ID: 27343682)

  • 1. Comparison of different sequencing and assembly strategies for a repeat-rich fungal genome, Ophiocordyceps sinensis.
    Li Y; Hsiang T; Yang RH; Hu XD; Wang K; Wang WJ; Wang XL; Jiao L; Yao YJ
    J Microbiol Methods; 2016 Sep; 128():1-6. PubMed ID: 27343682
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome Sequencing.
    Yoshinaga Y; Daum C; He G; O'Malley R
    Methods Mol Biol; 2018; 1775():37-52. PubMed ID: 29876807
    [TBL] [Abstract][Full Text] [Related]  

  • 3. HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads.
    Al-Okaily AA
    BMC Genomics; 2016 Mar; 17():193. PubMed ID: 26945881
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
    Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
    [TBL] [Abstract][Full Text] [Related]  

  • 5. De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis.
    Nowrousian M; Stajich JE; Chu M; Engh I; Espagne E; Halliday K; Kamerewerd J; Kempken F; Knab B; Kuo HC; Osiewacz HD; Pöggeler S; Read ND; Seiler S; Smith KM; Zickler D; Kück U; Freitag M
    PLoS Genet; 2010 Apr; 6(4):e1000891. PubMed ID: 20386741
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
    Stadermann KB; Weisshaar B; Holtgräwe D
    BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The complex task of choosing a de novo assembly: lessons from fungal genomes.
    Gallo JE; Muñoz JF; Misas E; McEwen JG; Clay OK
    Comput Biol Chem; 2014 Dec; 53 Pt A():97-107. PubMed ID: 25262360
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A comprehensive investigation of metagenome assembly by linked-read sequencing.
    Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
    Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.
    Umemura M; Koyama Y; Takeda I; Hagiwara H; Ikegami T; Koike H; Machida M
    PLoS One; 2013; 8(5):e63673. PubMed ID: 23667655
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.
    Faino L; Seidl MF; Datema E; van den Berg GC; Janssen A; Wittenberg AH; Thomma BP
    mBio; 2015 Aug; 6(4):. PubMed ID: 26286689
    [TBL] [Abstract][Full Text] [Related]  

  • 11. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A biologist's guide to de novo genome assembly using next-generation sequence data: A test with fungal genomes.
    Haridas S; Breuill C; Bohlmann J; Hsiang T
    J Microbiol Methods; 2011 Sep; 86(3):368-75. PubMed ID: 21749903
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly.
    Hu T; Chen J; Lin X; He W; Liang H; Wang M; Li W; Wu Z; Han M; Jin X; Kristiansen K; Xiao L; Zou Y
    Sci Rep; 2024 Jan; 14(1):1292. PubMed ID: 38221534
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of nine popular de novo assemblers in microbial genome assembly.
    Forouzan E; Maleki MSM; Karkhane AA; Yakhchali B
    J Microbiol Methods; 2017 Dec; 143():32-37. PubMed ID: 28939423
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PacBio Long-Read Sequencing, Assembly, and Funannotate Reannotation of the Complete Genome of Trichoderma reesei QM6a.
    Li WC; Wang TF
    Methods Mol Biol; 2021; 2234():311-329. PubMed ID: 33165795
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genome assembly using Nanopore-guided long and error-free DNA reads.
    Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
    BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Tigmint: correcting assembly errors using linked reads from large molecules.
    Jackman SD; Coombe L; Chu J; Warren RL; Vandervalk BP; Yeo S; Xue Z; Mohamadi H; Bohlmann J; Jones SJM; Birol I
    BMC Bioinformatics; 2018 Oct; 19(1):393. PubMed ID: 30367597
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data.
    Madoui MA; Dossat C; d'Agata L; van Oeveren J; van der Vossen E; Aury JM
    BMC Bioinformatics; 2016 Mar; 17():115. PubMed ID: 26936254
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Mitogenome assembly from genomic multiplex libraries: comparison of strategies and novel mitogenomes for five species of frogs.
    Machado DJ; Lyra ML; Grant T
    Mol Ecol Resour; 2016 May; 16(3):686-93. PubMed ID: 26607054
    [TBL] [Abstract][Full Text] [Related]  

  • 20. De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways.
    Hittalmani S; Mahesh HB; Mahadevaiah C; Prasannakumar MK
    BMC Genomics; 2016 Mar; 17():271. PubMed ID: 27036298
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.