BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

257 related articles for article (PubMed ID: 27357839)

  • 1. KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily.
    Pons T; Vazquez M; Matey-Hernandez ML; Brunak S; Valencia A; Izarzugaza JM
    BMC Genomics; 2016 Jun; 17 Suppl 2(Suppl 2):396. PubMed ID: 27357839
    [TBL] [Abstract][Full Text] [Related]  

  • 2. wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases.
    Vazquez M; Pons T; Brunak S; Valencia A; Izarzugaza JM
    Hum Mutat; 2016 Jan; 37(1):36-42. PubMed ID: 26443060
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Prioritization of pathogenic mutations in the protein kinase superfamily.
    Izarzugaza JM; del Pozo A; Vazquez M; Valencia A
    BMC Genomics; 2012 Jun; 13 Suppl 4(Suppl 4):S3. PubMed ID: 22759651
    [TBL] [Abstract][Full Text] [Related]  

  • 4. wKinMut: an integrated tool for the analysis and interpretation of mutations in human protein kinases.
    Izarzugaza JM; Vazquez M; del Pozo A; Valencia A
    BMC Bioinformatics; 2013 Nov; 14():345. PubMed ID: 24289158
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.
    Barenboim M; Masso M; Vaisman II; Jamison DC
    Proteins; 2008 Jun; 71(4):1930-9. PubMed ID: 18186470
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PON-P2: prediction method for fast and reliable identification of harmful variants.
    Niroula A; Urolagin S; Vihinen M
    PLoS One; 2015; 10(2):e0117380. PubMed ID: 25647319
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Structure-PPi: a module for the annotation of cancer-related single-nucleotide variants at protein-protein interfaces.
    Vázquez M; Valencia A; Pons T
    Bioinformatics; 2015 Jul; 31(14):2397-9. PubMed ID: 25765346
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.
    Milanesi L; Petrillo M; Sepe L; Boccia A; D'Agostino N; Passamano M; Di Nardo S; Tasco G; Casadio R; Paolella G
    BMC Bioinformatics; 2005 Dec; 6 Suppl 4(Suppl 4):S20. PubMed ID: 16351747
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations.
    Bendl J; Stourac J; Salanda O; Pavelka A; Wieben ED; Zendulka J; Brezovsky J; Damborsky J
    PLoS Comput Biol; 2014 Jan; 10(1):e1003440. PubMed ID: 24453961
    [TBL] [Abstract][Full Text] [Related]  

  • 10. IMHOTEP-a composite score integrating popular tools for predicting the functional consequences of non-synonymous sequence variants.
    Knecht C; Mort M; Junge O; Cooper DN; Krawczak M; Caliebe A
    Nucleic Acids Res; 2017 Feb; 45(3):e13. PubMed ID: 28180317
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Development of pathogenicity predictors specific for variants that do not comply with clinical guidelines for the use of computational evidence.
    de la Campa EÁ; Padilla N; de la Cruz X
    BMC Genomics; 2017 Aug; 18(Suppl 5):569. PubMed ID: 28812538
    [TBL] [Abstract][Full Text] [Related]  

  • 12. REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants.
    Ioannidis NM; Rothstein JH; Pejaver V; Middha S; McDonnell SK; Baheti S; Musolf A; Li Q; Holzinger E; Karyadi D; Cannon-Albright LA; Teerlink CC; Stanford JL; Isaacs WB; Xu J; Cooney KA; Lange EM; Schleutker J; Carpten JD; Powell IJ; Cussenot O; Cancel-Tassin G; Giles GG; MacInnis RJ; Maier C; Hsieh CL; Wiklund F; Catalona WJ; Foulkes WD; Mandal D; Eeles RA; Kote-Jarai Z; Bustamante CD; Schaid DJ; Hastie T; Ostrander EA; Bailey-Wilson JE; Radivojac P; Thibodeau SN; Whittemore AS; Sieh W
    Am J Hum Genet; 2016 Oct; 99(4):877-885. PubMed ID: 27666373
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluating the Performance of In silico Tools for PRRT2 Missense Variants.
    Sun H; Song W; Li B
    Comb Chem High Throughput Screen; 2024 Jun; ():. PubMed ID: 38910474
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Performance of in silico analysis in predicting the effect of non-synonymous variants in inherited steroid metabolic diseases.
    Chan AO
    Steroids; 2013 Jul; 78(7):726-30. PubMed ID: 23603282
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Prediction of protein kinase-specific phosphorylation sites in hierarchical structure using functional information and random forest.
    Fan W; Xu X; Shen Y; Feng H; Li A; Wang M
    Amino Acids; 2014 Apr; 46(4):1069-78. PubMed ID: 24452754
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MAPPIN: a method for annotating, predicting pathogenicity and mode of inheritance for nonsynonymous variants.
    Gosalia N; Economides AN; Dewey FE; Balasubramanian S
    Nucleic Acids Res; 2017 Oct; 45(18):10393-10402. PubMed ID: 28977528
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies.
    Dong C; Wei P; Jian X; Gibbs R; Boerwinkle E; Wang K; Liu X
    Hum Mol Genet; 2015 Apr; 24(8):2125-37. PubMed ID: 25552646
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions.
    Bendl J; Musil M; Štourač J; Zendulka J; Damborský J; Brezovský J
    PLoS Comput Biol; 2016 May; 12(5):e1004962. PubMed ID: 27224906
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The Complementarity Between Protein-Specific and General Pathogenicity Predictors for Amino Acid Substitutions.
    Riera C; Padilla N; de la Cruz X
    Hum Mutat; 2016 Oct; 37(10):1013-24. PubMed ID: 27397615
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Prediction of kinase-specific phosphorylation sites using conditional random fields.
    Dang TH; Van Leemput K; Verschoren A; Laukens K
    Bioinformatics; 2008 Dec; 24(24):2857-64. PubMed ID: 18940828
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.