BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

332 related articles for article (PubMed ID: 27367037)

  • 1. LotuS: an efficient and user-friendly OTU processing pipeline.
    Hildebrand F; Tadeo R; Voigt AY; Bork P; Raes J
    Microbiome; 2014 Sep; 2(1):30. PubMed ID: 27367037
    [TBL] [Abstract][Full Text] [Related]  

  • 2. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.
    Mysara M; Njima M; Leys N; Raes J; Monsieurs P
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369460
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences.
    Narayan NR; Weinmaier T; Laserna-Mendieta EJ; Claesson MJ; Shanahan F; Dabbagh K; Iwai S; DeSantis TZ
    BMC Genomics; 2020 Jan; 21(1):56. PubMed ID: 31952477
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
    Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
    Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.
    Kondratenko Y; Korobeynikov A; Lapidus A
    BMC Bioinformatics; 2020 Jul; 21(Suppl 12):303. PubMed ID: 32703166
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A critical analysis of state-of-the-art metagenomics OTU clustering algorithms.
    Bhat AH; Prabhu P; Balakrishnan K
    J Biosci; 2019 Dec; 44(6):. PubMed ID: 31894129
    [TBL] [Abstract][Full Text] [Related]  

  • 7. HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies.
    Zheng Q; Bartow-McKenney C; Meisel JS; Grice EA
    Genome Biol; 2018 Jun; 19(1):82. PubMed ID: 29950165
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
    Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
    BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons.
    Djemiel C; Dequiedt S; Karimi B; Cottin A; Girier T; El Djoudi Y; Wincker P; Lelièvre M; Mondy S; Chemidlin Prévost-Bouré N; Maron PA; Ranjard L; Terrat S
    BMC Bioinformatics; 2020 Oct; 21(1):492. PubMed ID: 33129268
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis.
    Schloss PD; Westcott SL
    Appl Environ Microbiol; 2011 May; 77(10):3219-26. PubMed ID: 21421784
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Analysis of 16S rRNA Gene Amplicon Sequences Using the QIIME Software Package.
    Lawley B; Tannock GW
    Methods Mol Biol; 2017; 1537():153-163. PubMed ID: 27924593
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis.
    Whelan FJ; Surette MG
    Microbiome; 2017 Aug; 5(1):100. PubMed ID: 28807046
    [TBL] [Abstract][Full Text] [Related]  

  • 13. IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data.
    Mysara M; Leys N; Raes J; Monsieurs P
    BMC Bioinformatics; 2016 Apr; 17(1):192. PubMed ID: 27130479
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Phylogeny-based classification of microbial communities.
    Tanaseichuk O; Borneman J; Jiang T
    Bioinformatics; 2014 Feb; 30(4):449-56. PubMed ID: 24369151
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform.
    Wen C; Wu L; Qin Y; Van Nostrand JD; Ning D; Sun B; Xue K; Liu F; Deng Y; Liang Y; Zhou J
    PLoS One; 2017; 12(4):e0176716. PubMed ID: 28453559
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A De Novo Robust Clustering Approach for Amplicon-Based Sequence Data.
    Bazin A; Debroas D; Mephu Nguifo E
    J Comput Biol; 2019 Jun; 26(6):618-624. PubMed ID: 30517025
    [No Abstract]   [Full Text] [Related]  

  • 17. Systematic processing of ribosomal RNA gene amplicon sequencing data.
    Tremblay J; Yergeau E
    Gigascience; 2019 Dec; 8(12):. PubMed ID: 31816087
    [TBL] [Abstract][Full Text] [Related]  

  • 18. OTUX: V-region specific OTU database for improved 16S rRNA OTU picking and efficient cross-study taxonomic comparison of microbiomes.
    Yadav D; Dutta A; Mande SS
    DNA Res; 2019 Apr; 26(2):147-156. PubMed ID: 30624596
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Inconsistent Denoising and Clustering Algorithms for Amplicon Sequence Data.
    Koskinen K; Auvinen P; Björkroth KJ; Hultman J
    J Comput Biol; 2015 Aug; 22(8):743-51. PubMed ID: 25525895
    [TBL] [Abstract][Full Text] [Related]  

  • 20. LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis.
    Özkurt E; Fritscher J; Soranzo N; Ng DYK; Davey RP; Bahram M; Hildebrand F
    Microbiome; 2022 Oct; 10(1):176. PubMed ID: 36258257
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.