233 related articles for article (PubMed ID: 27387364)
1. Statistically Consistent k-mer Methods for Phylogenetic Tree Reconstruction.
Allman ES; Rhodes JA; Sullivant S
J Comput Biol; 2017 Feb; 24(2):153-171. PubMed ID: 27387364
[TBL] [Abstract][Full Text] [Related]
2. Identifiability of Phylogenetic Parameters from k-mer Data Under the Coalescent.
Durden C; Sullivant S
Bull Math Biol; 2019 Feb; 81(2):431-451. PubMed ID: 29392644
[TBL] [Abstract][Full Text] [Related]
3. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
4. Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and Benchmarking.
Bogusz M; Whelan S
Syst Biol; 2017 Mar; 66(2):218-231. PubMed ID: 27633353
[TBL] [Abstract][Full Text] [Related]
5. Twisted trees and inconsistency of tree estimation when gaps are treated as missing data - The impact of model mis-specification in distance corrections.
McTavish EJ; Steel M; Holder MT
Mol Phylogenet Evol; 2015 Dec; 93():289-95. PubMed ID: 26256643
[TBL] [Abstract][Full Text] [Related]
6. Simultaneous statistical multiple alignment and phylogeny reconstruction.
Fleissner R; Metzler D; von Haeseler A
Syst Biol; 2005 Aug; 54(4):548-61. PubMed ID: 16085574
[TBL] [Abstract][Full Text] [Related]
7. KINN: An alignment-free accurate phylogeny reconstruction method based on inner distance distributions of k-mer pairs in biological sequences.
Tang R; Yu Z; Li J
Mol Phylogenet Evol; 2023 Feb; 179():107662. PubMed ID: 36375789
[TBL] [Abstract][Full Text] [Related]
8. kmer2vec: A Novel Method for Comparing DNA Sequences by word2vec Embedding.
Ren R; Yin C; S-T Yau S
J Comput Biol; 2022 Sep; 29(9):1001-1021. PubMed ID: 35593919
[TBL] [Abstract][Full Text] [Related]
9. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
[TBL] [Abstract][Full Text] [Related]
10. Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction.
Yang K; Zhang L
Nucleic Acids Res; 2008 Mar; 36(5):e33. PubMed ID: 18296485
[TBL] [Abstract][Full Text] [Related]
11. K-mer natural vector and its application to the phylogenetic analysis of genetic sequences.
Wen J; Chan RH; Yau SC; He RL; Yau SS
Gene; 2014 Aug; 546(1):25-34. PubMed ID: 24858075
[TBL] [Abstract][Full Text] [Related]
12. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
13. Phylogenetic trees based on gene content.
Huson DH; Steel M
Bioinformatics; 2004 Sep; 20(13):2044-9. PubMed ID: 15044248
[TBL] [Abstract][Full Text] [Related]
14. Is multiple-sequence alignment required for accurate inference of phylogeny?
Höhl M; Ragan MA
Syst Biol; 2007 Apr; 56(2):206-21. PubMed ID: 17454975
[TBL] [Abstract][Full Text] [Related]
15. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
Bastien O; Ortet P; Roy S; Maréchal E
BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
[TBL] [Abstract][Full Text] [Related]
16. Molecular Phylogenetics: Concepts for a Newcomer.
Ajawatanawong P
Adv Biochem Eng Biotechnol; 2017; 160():185-196. PubMed ID: 27783136
[TBL] [Abstract][Full Text] [Related]
17. Assessment of protein distance measures and tree-building methods for phylogenetic tree reconstruction.
Hollich V; Milchert L; Arvestad L; Sonnhammer EL
Mol Biol Evol; 2005 Nov; 22(11):2257-64. PubMed ID: 16049194
[TBL] [Abstract][Full Text] [Related]
18. Genome classification improvements based on k-mer intervals in sequences.
Han GB; Cho DH
Genomics; 2019 Dec; 111(6):1574-1582. PubMed ID: 30439480
[TBL] [Abstract][Full Text] [Related]
19. Towards integration of multiple alignment and phylogenetic tree construction.
Vingron M; von Haeseler A
J Comput Biol; 1997; 4(1):23-34. PubMed ID: 9109035
[TBL] [Abstract][Full Text] [Related]
20. Alignment-free inference of hierarchical and reticulate phylogenomic relationships.
Bernard G; Chan CX; Chan YB; Chua XY; Cong Y; Hogan JM; Maetschke SR; Ragan MA
Brief Bioinform; 2019 Mar; 20(2):426-435. PubMed ID: 28673025
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
