These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

456 related articles for article (PubMed ID: 27391817)

  • 1. Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity.
    Pancaldi V; Carrillo-de-Santa-Pau E; Javierre BM; Juan D; Fraser P; Spivakov M; Valencia A; Rico D
    Genome Biol; 2016 Jul; 17(1):152. PubMed ID: 27391817
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states.
    Li WV; Razaee ZS; Li JJ
    BMC Genomics; 2016 Jan; 17 Suppl 1(Suppl 1):10. PubMed ID: 26817822
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts.
    Ay F; Bailey TL; Noble WS
    Genome Res; 2014 Jun; 24(6):999-1011. PubMed ID: 24501021
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C.
    Lee BH; Wu Z; Rhie SK
    Epigenetics Chromatin; 2022 Dec; 15(1):41. PubMed ID: 36544209
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin.
    Thibodeau A; Márquez EJ; Shin DG; Vera-Licona P; Ucar D
    Sci Rep; 2017 Oct; 7(1):14466. PubMed ID: 29089515
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Prediction of regulatory elements in mammalian genomes using chromatin signatures.
    Won KJ; Chepelev I; Ren B; Wang W
    BMC Bioinformatics; 2008 Dec; 9():547. PubMed ID: 19094206
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Practical Analysis of Genome Contact Interaction Experiments.
    Carty MA; Elemento O
    Methods Mol Biol; 2016; 1418():177-89. PubMed ID: 27008015
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Integrative analysis of reference epigenomes in 20 rice varieties.
    Zhao L; Xie L; Zhang Q; Ouyang W; Deng L; Guan P; Ma M; Li Y; Zhang Y; Xiao Q; Zhang J; Li H; Wang S; Man J; Cao Z; Zhang Q; Zhang Q; Li G; Li X
    Nat Commun; 2020 May; 11(1):2658. PubMed ID: 32461553
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Polycomb repressive complex 2 epigenomic signature defines age-associated hypermethylation and gene expression changes.
    Dozmorov MG
    Epigenetics; 2015; 10(6):484-95. PubMed ID: 25880792
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse.
    Ngo V; Chen Z; Zhang K; Whitaker JW; Wang M; Wang W
    Proc Natl Acad Sci U S A; 2019 Feb; 116(9):3668-3677. PubMed ID: 30755522
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding.
    Hsieh TS; Cattoglio C; Slobodyanyuk E; Hansen AS; Rando OJ; Tjian R; Darzacq X
    Mol Cell; 2020 May; 78(3):539-553.e8. PubMed ID: 32213323
    [TBL] [Abstract][Full Text] [Related]  

  • 12. HebbPlot: an intelligent tool for learning and visualizing chromatin mark signatures.
    Girgis HZ; Velasco A; Reyes ZE
    BMC Bioinformatics; 2018 Sep; 19(1):310. PubMed ID: 30176808
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genomic Marks Associated with Chromatin Compartments in the CTCF, RNAPII Loop and Genomic Windows.
    Szczepińska T; Mollah AF; Plewczynski D
    Int J Mol Sci; 2021 Oct; 22(21):. PubMed ID: 34769020
    [TBL] [Abstract][Full Text] [Related]  

  • 14. IMPACT: Genomic Annotation of Cell-State-Specific Regulatory Elements Inferred from the Epigenome of Bound Transcription Factors.
    Amariuta T; Luo Y; Gazal S; Davenport EE; van de Geijn B; Ishigaki K; Westra HJ; Teslovich N; Okada Y; Yamamoto K; ; Price AL; Raychaudhuri S
    Am J Hum Genet; 2019 May; 104(5):879-895. PubMed ID: 31006511
    [TBL] [Abstract][Full Text] [Related]  

  • 15. H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells.
    Karmodiya K; Krebs AR; Oulad-Abdelghani M; Kimura H; Tora L
    BMC Genomics; 2012 Aug; 13():424. PubMed ID: 22920947
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks.
    Madrid-Mencía M; Raineri E; Cao TBN; Pancaldi V
    Nucleic Acids Res; 2020 May; 48(8):4066-4080. PubMed ID: 32182345
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A chromatin insulator driving three-dimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber.
    Comet I; Schuettengruber B; Sexton T; Cavalli G
    Proc Natl Acad Sci U S A; 2011 Feb; 108(6):2294-9. PubMed ID: 21262819
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Chromatin architecture reorganization during stem cell differentiation.
    Dixon JR; Jung I; Selvaraj S; Shen Y; Antosiewicz-Bourget JE; Lee AY; Ye Z; Kim A; Rajagopal N; Xie W; Diao Y; Liang J; Zhao H; Lobanenkov VV; Ecker JR; Thomson JA; Ren B
    Nature; 2015 Feb; 518(7539):331-6. PubMed ID: 25693564
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The bread wheat epigenomic map reveals distinct chromatin architectural and evolutionary features of functional genetic elements.
    Li Z; Wang M; Lin K; Xie Y; Guo J; Ye L; Zhuang Y; Teng W; Ran X; Tong Y; Xue Y; Zhang W; Zhang Y
    Genome Biol; 2019 Jul; 20(1):139. PubMed ID: 31307500
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Cell Type-Specific Chromatin Signatures Underline Regulatory DNA Elements in Human Induced Pluripotent Stem Cells and Somatic Cells.
    Zhao MT; Shao NY; Hu S; Ma N; Srinivasan R; Jahanbani F; Lee J; Zhang SL; Snyder MP; Wu JC
    Circ Res; 2017 Nov; 121(11):1237-1250. PubMed ID: 29030344
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.