264 related articles for article (PubMed ID: 27396578)
1. Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution.
Kutchko KM; Laederach A
Wiley Interdiscip Rev RNA; 2017 Jan; 8(1):. PubMed ID: 27396578
[TBL] [Abstract][Full Text] [Related]
2. Exploring RNA structural codes with SHAPE chemistry.
Weeks KM; Mauger DM
Acc Chem Res; 2011 Dec; 44(12):1280-91. PubMed ID: 21615079
[TBL] [Abstract][Full Text] [Related]
3. Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution.
Wilkinson KA; Merino EJ; Weeks KM
Nat Protoc; 2006; 1(3):1610-6. PubMed ID: 17406453
[TBL] [Abstract][Full Text] [Related]
4. Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
Watters KE; Yu AM; Strobel EJ; Settle AH; Lucks JB
Methods; 2016 Jul; 103():34-48. PubMed ID: 27064082
[TBL] [Abstract][Full Text] [Related]
5. RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE).
Merino EJ; Wilkinson KA; Coughlan JL; Weeks KM
J Am Chem Soc; 2005 Mar; 127(12):4223-31. PubMed ID: 15783204
[TBL] [Abstract][Full Text] [Related]
6. Use of SHAPE to select 2AP substitution sites for RNA-ligand interactions and dynamics studies.
Soulière MF; Micura R
Methods Mol Biol; 2014; 1103():227-39. PubMed ID: 24318898
[TBL] [Abstract][Full Text] [Related]
7. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).
Watters KE; Lucks JB
Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597
[TBL] [Abstract][Full Text] [Related]
8. RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts.
Wilkinson KA; Merino EJ; Weeks KM
J Am Chem Soc; 2005 Apr; 127(13):4659-67. PubMed ID: 15796531
[TBL] [Abstract][Full Text] [Related]
9. Quantitative Understanding of SHAPE Mechanism from RNA Structure and Dynamics Analysis.
Hurst T; Xu X; Zhao P; Chen SJ
J Phys Chem B; 2018 May; 122(18):4771-4783. PubMed ID: 29659274
[TBL] [Abstract][Full Text] [Related]
10. Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data.
Tan Z; Sharma G; Mathews DH
Biophys J; 2017 Jul; 113(2):330-338. PubMed ID: 28735622
[TBL] [Abstract][Full Text] [Related]
11. Computational prediction of RNA secondary structure.
Moss WN
Methods Enzymol; 2013; 530():3-65. PubMed ID: 24034313
[TBL] [Abstract][Full Text] [Related]
12. SHAPE to Probe RNA Structure and RNA-Protein Interactions In Vitro.
Saha K; Ghosh G
Methods Mol Biol; 2023; 2666():69-80. PubMed ID: 37166657
[TBL] [Abstract][Full Text] [Related]
13. Assaying RNA Structure Inside Living Cells with SHAPE.
Feng C; Chan D; Spitale RC
Methods Mol Biol; 2017; 1648():247-256. PubMed ID: 28766302
[TBL] [Abstract][Full Text] [Related]
14. Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis.
Smola MJ; Rice GM; Busan S; Siegfried NA; Weeks KM
Nat Protoc; 2015 Nov; 10(11):1643-69. PubMed ID: 26426499
[TBL] [Abstract][Full Text] [Related]
15. Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
Lucks JB; Mortimer SA; Trapnell C; Luo S; Aviran S; Schroth GP; Pachter L; Doudna JA; Arkin AP
Proc Natl Acad Sci U S A; 2011 Jul; 108(27):11063-8. PubMed ID: 21642531
[TBL] [Abstract][Full Text] [Related]
16. Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding.
Strobel EJ; Watters KE; Nedialkov Y; Artsimovitch I; Lucks JB
Nucleic Acids Res; 2017 Jul; 45(12):e109. PubMed ID: 28398514
[TBL] [Abstract][Full Text] [Related]
17. Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction.
Montaseri S; Zare-Mirakabad F; Ganjtabesh M
J Bioinform Comput Biol; 2017 Dec; 15(6):1750023. PubMed ID: 29113564
[TBL] [Abstract][Full Text] [Related]
18. New insights from cluster analysis methods for RNA secondary structure prediction.
Rogers E; Heitsch C
Wiley Interdiscip Rev RNA; 2016 May; 7(3):278-94. PubMed ID: 26971529
[TBL] [Abstract][Full Text] [Related]
19. A powerful approach for the selection of 2-aminopurine substitution sites to investigate RNA folding.
Soulière MF; Haller A; Rieder R; Micura R
J Am Chem Soc; 2011 Oct; 133(40):16161-7. PubMed ID: 21882876
[TBL] [Abstract][Full Text] [Related]
20. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease.
Steen KA; Malhotra A; Weeks KM
J Am Chem Soc; 2010 Jul; 132(29):9940-3. PubMed ID: 20597503
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]