183 related articles for article (PubMed ID: 27401230)
1. Genome-Wide Identification of Regulatory Sequences Undergoing Accelerated Evolution in the Human Genome.
Dong X; Wang X; Zhang F; Tian W
Mol Biol Evol; 2016 Oct; 33(10):2565-75. PubMed ID: 27401230
[TBL] [Abstract][Full Text] [Related]
2. Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.
Shi B; Guo X; Wu T; Sheng S; Wang J; Skogerbø G; Zhu X; Chen R
BMC Genomics; 2009 Feb; 10():92. PubMed ID: 19243610
[TBL] [Abstract][Full Text] [Related]
3. The accessible chromatin landscape of the human genome.
Thurman RE; Rynes E; Humbert R; Vierstra J; Maurano MT; Haugen E; Sheffield NC; Stergachis AB; Wang H; Vernot B; Garg K; John S; Sandstrom R; Bates D; Boatman L; Canfield TK; Diegel M; Dunn D; Ebersol AK; Frum T; Giste E; Johnson AK; Johnson EM; Kutyavin T; Lajoie B; Lee BK; Lee K; London D; Lotakis D; Neph S; Neri F; Nguyen ED; Qu H; Reynolds AP; Roach V; Safi A; Sanchez ME; Sanyal A; Shafer A; Simon JM; Song L; Vong S; Weaver M; Yan Y; Zhang Z; Zhang Z; Lenhard B; Tewari M; Dorschner MO; Hansen RS; Navas PA; Stamatoyannopoulos G; Iyer VR; Lieb JD; Sunyaev SR; Akey JM; Sabo PJ; Kaul R; Furey TS; Dekker J; Crawford GE; Stamatoyannopoulos JA
Nature; 2012 Sep; 489(7414):75-82. PubMed ID: 22955617
[TBL] [Abstract][Full Text] [Related]
4. Index and biological spectrum of human DNase I hypersensitive sites.
Meuleman W; Muratov A; Rynes E; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Teodosiadis A; Reynolds A; Haugen E; Nelson J; Johnson A; Frerker M; Buckley M; Sandstrom R; Vierstra J; Kaul R; Stamatoyannopoulos J
Nature; 2020 Aug; 584(7820):244-251. PubMed ID: 32728217
[TBL] [Abstract][Full Text] [Related]
5. Use Chou's 5-steps rule to identify DNase I hypersensitive sites via dinucleotide property matrix and extreme gradient boosting.
Zhang S; Xue T
Mol Genet Genomics; 2020 Nov; 295(6):1431-1442. PubMed ID: 32685987
[TBL] [Abstract][Full Text] [Related]
6. Genome-Wide Characterization of DNase I-Hypersensitive Sites and Cold Response Regulatory Landscapes in Grasses.
Han J; Wang P; Wang Q; Lin Q; Chen Z; Yu G; Miao C; Dao Y; Wu R; Schnable JC; Tang H; Wang K
Plant Cell; 2020 Aug; 32(8):2457-2473. PubMed ID: 32471863
[TBL] [Abstract][Full Text] [Related]
7. Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples.
Jin W; Tang Q; Wan M; Cui K; Zhang Y; Ren G; Ni B; Sklar J; Przytycka TM; Childs R; Levens D; Zhao K
Nature; 2015 Dec; 528(7580):142-6. PubMed ID: 26605532
[TBL] [Abstract][Full Text] [Related]
8. Correlation between DNase I hypersensitive site distribution and gene expression in HeLa S3 cells.
Wang YM; Zhou P; Wang LY; Li ZH; Zhang YN; Zhang YX
PLoS One; 2012; 7(8):e42414. PubMed ID: 22900019
[TBL] [Abstract][Full Text] [Related]
9. Genome-wide discovery of active regulatory elements and transcription factor footprints in
Ho MCW; Quintero-Cadena P; Sternberg PW
Genome Res; 2017 Dec; 27(12):2108-2119. PubMed ID: 29074739
[TBL] [Abstract][Full Text] [Related]
10. Advances of DNase-seq for mapping active gene regulatory elements across the genome in animals.
Chen A; Chen D; Chen Y
Gene; 2018 Aug; 667():83-94. PubMed ID: 29772251
[TBL] [Abstract][Full Text] [Related]
11. Comprehensive identification and analysis of human accelerated regulatory DNA.
Gittelman RM; Hun E; Ay F; Madeoy J; Pennacchio L; Noble WS; Hawkins RD; Akey JM
Genome Res; 2015 Sep; 25(9):1245-55. PubMed ID: 26104583
[TBL] [Abstract][Full Text] [Related]
12. Proliferation of Regulatory DNA Elements Derived from Transposable Elements in the Maize Genome.
Zhao H; Zhang W; Chen L; Wang L; Marand AP; Wu Y; Jiang J
Plant Physiol; 2018 Apr; 176(4):2789-2803. PubMed ID: 29463772
[TBL] [Abstract][Full Text] [Related]
13. Accelerated Evolution of the Regulatory Sequences of Brain Development in the Human Genome.
Lee KS; Bang H; Choi JK; Kim K
Mol Cells; 2020 Apr; 43(4):331-339. PubMed ID: 32235023
[TBL] [Abstract][Full Text] [Related]
14. Evolution of DNAase I Hypersensitive Sites in MHC Regulatory Regions of Primates.
Jin Y; Gittelman RM; Lu Y; Liu X; Li MD; Ling F; Akey JM
Genetics; 2018 Jun; 209(2):579-589. PubMed ID: 29669733
[TBL] [Abstract][Full Text] [Related]
15. pDHS-SVM: A prediction method for plant DNase I hypersensitive sites based on support vector machine.
Zhang S; Zhou Z; Chen X; Hu Y; Yang L
J Theor Biol; 2017 Aug; 426():126-133. PubMed ID: 28552554
[TBL] [Abstract][Full Text] [Related]
16. Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.
Shibata Y; Sheffield NC; Fedrigo O; Babbitt CC; Wortham M; Tewari AK; London D; Song L; Lee BK; Iyer VR; Parker SC; Margulies EH; Wray GA; Furey TS; Crawford GE
PLoS Genet; 2012 Jun; 8(6):e1002789. PubMed ID: 22761590
[TBL] [Abstract][Full Text] [Related]
17. Open chromatin in plant genomes.
Zhang W; Zhang T; Wu Y; Jiang J
Cytogenet Genome Res; 2014; 143(1-3):18-27. PubMed ID: 24923879
[TBL] [Abstract][Full Text] [Related]
18. Systematic localization of common disease-associated variation in regulatory DNA.
Maurano MT; Humbert R; Rynes E; Thurman RE; Haugen E; Wang H; Reynolds AP; Sandstrom R; Qu H; Brody J; Shafer A; Neri F; Lee K; Kutyavin T; Stehling-Sun S; Johnson AK; Canfield TK; Giste E; Diegel M; Bates D; Hansen RS; Neph S; Sabo PJ; Heimfeld S; Raubitschek A; Ziegler S; Cotsapas C; Sotoodehnia N; Glass I; Sunyaev SR; Kaul R; Stamatoyannopoulos JA
Science; 2012 Sep; 337(6099):1190-5. PubMed ID: 22955828
[TBL] [Abstract][Full Text] [Related]
19. Comparison of chromatin accessibility landscapes during early development of prefrontal cortex between rhesus macaque and human.
Yao X; Lu Z; Feng Z; Gao L; Zhou X; Li M; Zhong S; Wu Q; Liu Z; Zhang H; Liu Z; Yi L; Zhou T; Zhao X; Zhang J; Wang Y; Huang X; Wang X; Liu J
Nat Commun; 2022 Jul; 13(1):3883. PubMed ID: 35794099
[TBL] [Abstract][Full Text] [Related]
20. CEPZ: A Novel Predictor for Identification of DNase I Hypersensitive Sites.
Zheng Y; Wang H; Ding Y; Guo F
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2768-2774. PubMed ID: 33481716
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]