BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

308 related articles for article (PubMed ID: 27402765)

  • 1. Blind tests of RNA nearest-neighbor energy prediction.
    Chou FC; Kladwang W; Kappel K; Das R
    Proc Natl Acad Sci U S A; 2016 Jul; 113(30):8430-5. PubMed ID: 27402765
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Predictions and analyses of RNA nearest neighbor parameters for modified nucleotides.
    Hopfinger MC; Kirkpatrick CC; Znosko BM
    Nucleic Acids Res; 2020 Sep; 48(16):8901-8913. PubMed ID: 32810273
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction.
    Doshi KJ; Cannone JJ; Cobaugh CW; Gutell RR
    BMC Bioinformatics; 2004 Aug; 5():105. PubMed ID: 15296519
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides.
    Hudson GA; Bloomingdale RJ; Znosko BM
    RNA; 2013 Nov; 19(11):1474-82. PubMed ID: 24062573
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
    Vecenie CJ; Morrow CV; Zyra A; Serra MJ
    Biochemistry; 2006 Feb; 45(5):1400-7. PubMed ID: 16445282
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops.
    Blose JM; Manni ML; Klapec KA; Stranger-Jones Y; Zyra AC; Sim V; Griffith CA; Long JD; Serra MJ
    Biochemistry; 2007 Dec; 46(51):15123-35. PubMed ID: 18047298
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The loss of a hydrogen bond: Thermodynamic contributions of a non-standard nucleotide.
    Jolley EA; Znosko BM
    Nucleic Acids Res; 2017 Feb; 45(3):1479-1487. PubMed ID: 28180321
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Estimating Energy Parameters for RNA Secondary Structure Predictions Using Both Experimental and Computational Data.
    Nishida S; Sakuraba S; Asai K; Hamada M
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(5):1645-1655. PubMed ID: 29994069
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improving RNA nearest neighbor parameters for helices by going beyond the two-state model.
    Spasic A; Berger KD; Chen JL; Seetin MG; Turner DH; Mathews DH
    Nucleic Acids Res; 2018 Jun; 46(10):4883-4892. PubMed ID: 29718397
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Nearest neighbor parameters for inosine x uridine pairs in RNA duplexes.
    Wright DJ; Rice JL; Yanker DM; Znosko BM
    Biochemistry; 2007 Apr; 46(15):4625-34. PubMed ID: 17378583
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.
    Burkard ME; Kierzek R; Turner DH
    J Mol Biol; 1999 Jul; 290(5):967-82. PubMed ID: 10438596
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Thermodynamic characterization of single mismatches found in naturally occurring RNA.
    Davis AR; Znosko BM
    Biochemistry; 2007 Nov; 46(46):13425-36. PubMed ID: 17958380
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Improved Model for Predicting the Free Energy Contribution of Dinucleotide Bulges to RNA Duplex Stability.
    Tomcho JC; Tillman MR; Znosko BM
    Biochemistry; 2015 Sep; 54(34):5290-6. PubMed ID: 26286708
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation.
    Yesselman JD; Denny SK; Bisaria N; Herschlag D; Greenleaf WJ; Das R
    Proc Natl Acad Sci U S A; 2019 Aug; 116(34):16847-16855. PubMed ID: 31375637
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Stability of RNA hairpins closed by wobble base pairs.
    Giese MR; Betschart K; Dale T; Riley CK; Rowan C; Sprouse KJ; Serra MJ
    Biochemistry; 1998 Jan; 37(4):1094-100. PubMed ID: 9454601
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs.
    Xia T; SantaLucia J; Burkard ME; Kierzek R; Schroeder SJ; Jiao X; Cox C; Turner DH
    Biochemistry; 1998 Oct; 37(42):14719-35. PubMed ID: 9778347
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Thermodynamic parameters for an expanded nearest-neighbor model for the formation of RNA duplexes with single nucleotide bulges.
    Znosko BM; Silvestri SB; Volkman H; Boswell B; Serra MJ
    Biochemistry; 2002 Aug; 41(33):10406-17. PubMed ID: 12173927
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Thermodynamic parameters based on a nearest-neighbor model for DNA sequences with a single-bulge loop.
    Tanaka F; Kameda A; Yamamoto M; Ohuchi A
    Biochemistry; 2004 Jun; 43(22):7143-50. PubMed ID: 15170351
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sequence dependence of stability for coaxial stacking of RNA helixes with Watson-Crick base paired interfaces.
    Walter AE; Turner DH
    Biochemistry; 1994 Oct; 33(42):12715-9. PubMed ID: 7522562
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improved parameters for the prediction of RNA hairpin stability.
    Serra MJ; Barnes TW; Betschart K; Gutierrez MJ; Sprouse KJ; Riley CK; Stewart L; Temel RE
    Biochemistry; 1997 Apr; 36(16):4844-51. PubMed ID: 9125504
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.