291 related articles for article (PubMed ID: 27402907)
1. BioNetGen 2.2: advances in rule-based modeling.
Harris LA; Hogg JS; Tapia JJ; Sekar JA; Gupta S; Korsunsky I; Arora A; Barua D; Sheehan RP; Faeder JR
Bioinformatics; 2016 Nov; 32(21):3366-3368. PubMed ID: 27402907
[TBL] [Abstract][Full Text] [Related]
2. BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments.
Thomas BR; Chylek LA; Colvin J; Sirimulla S; Clayton AH; Hlavacek WS; Posner RG
Bioinformatics; 2016 Mar; 32(5):798-800. PubMed ID: 26556387
[TBL] [Abstract][Full Text] [Related]
3. Rule-based modeling with Virtual Cell.
Schaff JC; Vasilescu D; Moraru II; Loew LM; Blinov ML
Bioinformatics; 2016 Sep; 32(18):2880-2. PubMed ID: 27497444
[TBL] [Abstract][Full Text] [Related]
4. SPATKIN: a simulator for rule-based modeling of biomolecular site dynamics on surfaces.
Kochanczyk M; Hlavacek WS; Lipniacki T
Bioinformatics; 2017 Nov; 33(22):3667-3669. PubMed ID: 29036531
[TBL] [Abstract][Full Text] [Related]
5. Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface.
Andrews SS
Bioinformatics; 2017 Mar; 33(5):710-717. PubMed ID: 28365760
[TBL] [Abstract][Full Text] [Related]
6. libRoadRunner: a high performance SBML simulation and analysis library.
Somogyi ET; Bouteiller JM; Glazier JA; König M; Medley JK; Swat MH; Sauro HM
Bioinformatics; 2015 Oct; 31(20):3315-21. PubMed ID: 26085503
[TBL] [Abstract][Full Text] [Related]
7. Simulated single molecule microscopy with SMeagol.
Lindén M; Ćurić V; Boucharin A; Fange D; Elf J
Bioinformatics; 2016 Aug; 32(15):2394-5. PubMed ID: 27153711
[TBL] [Abstract][Full Text] [Related]
8. PaxtoolsR: pathway analysis in R using Pathway Commons.
Luna A; Babur Ö; Aksoy BA; Demir E; Sander C
Bioinformatics; 2016 Apr; 32(8):1262-4. PubMed ID: 26685306
[TBL] [Abstract][Full Text] [Related]
9. PHYLUCE is a software package for the analysis of conserved genomic loci.
Faircloth BC
Bioinformatics; 2016 Mar; 32(5):786-8. PubMed ID: 26530724
[TBL] [Abstract][Full Text] [Related]
10. GPU-powered model analysis with PySB/cupSODA.
Harris LA; Nobile MS; Pino JC; Lubbock ALR; Besozzi D; Mauri G; Cazzaniga P; Lopez CF
Bioinformatics; 2017 Nov; 33(21):3492-3494. PubMed ID: 28666314
[TBL] [Abstract][Full Text] [Related]
11. JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Rodriguez N; Thomas A; Watanabe L; Vazirabad IY; Kofia V; Gómez HF; Mittag F; Matthes J; Rudolph J; Wrzodek F; Netz E; Diamantikos A; Eichner J; Keller R; Wrzodek C; Fröhlich S; Lewis NE; Myers CJ; Le Novère N; Palsson BØ; Hucka M; Dräger A
Bioinformatics; 2015 Oct; 31(20):3383-6. PubMed ID: 26079347
[TBL] [Abstract][Full Text] [Related]
12. BioRuby: bioinformatics software for the Ruby programming language.
Goto N; Prins P; Nakao M; Bonnal R; Aerts J; Katayama T
Bioinformatics; 2010 Oct; 26(20):2617-9. PubMed ID: 20739307
[TBL] [Abstract][Full Text] [Related]
13. Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.
Gendoo DM; Ratanasirigulchai N; Schröder MS; Paré L; Parker JS; Prat A; Haibe-Kains B
Bioinformatics; 2016 Apr; 32(7):1097-9. PubMed ID: 26607490
[TBL] [Abstract][Full Text] [Related]
14. FILTUS: a desktop GUI for fast and efficient detection of disease-causing variants, including a novel autozygosity detector.
Vigeland MD; Gjøtterud KS; Selmer KK
Bioinformatics; 2016 May; 32(10):1592-4. PubMed ID: 26819469
[TBL] [Abstract][Full Text] [Related]
15. chipPCR: an R package to pre-process raw data of amplification curves.
Rödiger S; Burdukiewicz M; Schierack P
Bioinformatics; 2015 Sep; 31(17):2900-2. PubMed ID: 25913204
[TBL] [Abstract][Full Text] [Related]
16. Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
Bonnal RJ; Aerts J; Githinji G; Goto N; MacLean D; Miller CA; Mishima H; Pagani M; Ramirez-Gonzalez R; Smant G; Strozzi F; Syme R; Vos R; Wennblom TJ; Woodcroft BJ; Katayama T; Prins P
Bioinformatics; 2012 Apr; 28(7):1035-7. PubMed ID: 22332238
[TBL] [Abstract][Full Text] [Related]
17. CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets.
Dao D; Fraser AN; Hung J; Ljosa V; Singh S; Carpenter AE
Bioinformatics; 2016 Oct; 32(20):3210-3212. PubMed ID: 27354701
[TBL] [Abstract][Full Text] [Related]
18. geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees.
Pennell MW; Eastman JM; Slater GJ; Brown JW; Uyeda JC; FitzJohn RG; Alfaro ME; Harmon LJ
Bioinformatics; 2014 Aug; 30(15):2216-8. PubMed ID: 24728855
[TBL] [Abstract][Full Text] [Related]
19. SELAM: simulation of epistasis and local adaptation during admixture with mate choice.
Corbett-Detig R; Jones M
Bioinformatics; 2016 Oct; 32(19):3035-7. PubMed ID: 27318207
[TBL] [Abstract][Full Text] [Related]
20. Nozzle: a report generation toolkit for data analysis pipelines.
Gehlenborg N; Noble MS; Getz G; Chin L; Park PJ
Bioinformatics; 2013 Apr; 29(8):1089-91. PubMed ID: 23419376
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
