These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. SELANSI: a toolbox for simulation of stochastic gene regulatory networks. Pájaro M; Otero-Muras I; Vázquez C; Alonso AA Bioinformatics; 2018 Mar; 34(5):893-895. PubMed ID: 29040384 [TBL] [Abstract][Full Text] [Related]
4. IDESS: a toolbox for identification and automated design of stochastic gene circuits. Sequeiros C; Pájaro M; Vázquez C; Banga JR; Otero-Muras I Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37988145 [TBL] [Abstract][Full Text] [Related]
8. AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology. Balsa-Canto E; Henriques D; Gábor A; Banga JR Bioinformatics; 2016 Nov; 32(21):3357-3359. PubMed ID: 27378288 [TBL] [Abstract][Full Text] [Related]
9. Multicriteria global optimization for biocircuit design. Otero-Muras I; Banga JR BMC Syst Biol; 2014 Sep; 8():113. PubMed ID: 25248337 [TBL] [Abstract][Full Text] [Related]
16. Automatic design of synthetic gene circuits through mixed integer non-linear programming. Huynh L; Kececioglu J; Köppe M; Tagkopoulos I PLoS One; 2012; 7(4):e35529. PubMed ID: 22536398 [TBL] [Abstract][Full Text] [Related]
17. AMIGO, a toolbox for advanced model identification in systems biology using global optimization. Balsa-Canto E; Banga JR Bioinformatics; 2011 Aug; 27(16):2311-3. PubMed ID: 21685047 [TBL] [Abstract][Full Text] [Related]
18. A computational pipeline for identifying kinetic motifs to aid in the design and improvement of synthetic gene circuits. Chiang AW; Hwang MJ BMC Bioinformatics; 2013; 14 Suppl 16(Suppl 16):S5. PubMed ID: 24564638 [TBL] [Abstract][Full Text] [Related]
19. CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks. Szederkényi G; Banga JR; Alonso AA Bioinformatics; 2012 Jun; 28(11):1549-50. PubMed ID: 22492646 [TBL] [Abstract][Full Text] [Related]