151 related articles for article (PubMed ID: 27448822)
1. Multiplexed next-generation sequencing and de novo assembly to obtain near full-length HIV-1 genome from plasma virus.
Aralaguppe SG; Siddik AB; Manickam A; Ambikan AT; Kumar MM; Fernandes SJ; Amogne W; Bangaruswamy DK; Hanna LE; Sonnerborg A; Neogi U
J Virol Methods; 2016 Oct; 236():98-104. PubMed ID: 27448822
[TBL] [Abstract][Full Text] [Related]
2. Subtype-independent near full-length HIV-1 genome sequencing and assembly to be used in large molecular epidemiological studies and clinical management.
Grossmann S; Nowak P; Neogi U
J Int AIDS Soc; 2015; 18(1):20035. PubMed ID: 26115688
[TBL] [Abstract][Full Text] [Related]
3. Cost-efficient HIV-1 drug resistance surveillance using multiplexed high-throughput amplicon sequencing: implications for use in low- and middle-income countries.
Ekici H; Rao SD; Sönnerborg A; Ramprasad VL; Gupta R; Neogi U
J Antimicrob Chemother; 2014 Dec; 69(12):3349-55. PubMed ID: 25085657
[TBL] [Abstract][Full Text] [Related]
4. Deep sequencing of near full-length HIV-1 genomes from plasma identifies circulating subtype C and infrequent occurrence of AC recombinant form in Southern India.
Alampalli SV; Thomson MM; Sampathkumar R; Sivaraman K; U K J AJ; Dhar C; D Souza G; Berry N; Vyakarnam A
PLoS One; 2017; 12(12):e0188603. PubMed ID: 29220350
[TBL] [Abstract][Full Text] [Related]
5. A Pan-HIV Strategy for Complete Genome Sequencing.
Berg MG; Yamaguchi J; Alessandri-Gradt E; Tell RW; Plantier JC; Brennan CA
J Clin Microbiol; 2016 Apr; 54(4):868-82. PubMed ID: 26699702
[TBL] [Abstract][Full Text] [Related]
6. Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes.
Gall A; Ferns B; Morris C; Watson S; Cotten M; Robinson M; Berry N; Pillay D; Kellam P
J Clin Microbiol; 2012 Dec; 50(12):3838-44. PubMed ID: 22993180
[TBL] [Abstract][Full Text] [Related]
7. Ultra-Deep Sequencing of HIV-1 near Full-Length and Partial Proviral Genomes Reveals High Genetic Diversity among Brazilian Blood Donors.
Pessôa R; Loureiro P; Esther Lopes M; Carneiro-Proietti AB; Sabino EC; Busch MP; Sanabani SS
PLoS One; 2016; 11(3):e0152499. PubMed ID: 27031505
[TBL] [Abstract][Full Text] [Related]
8. Phylogenetic Analysis of Ethiopian HIV-1 Subtype C Near Full-Length Genomes Reveals High Intrasubtype Diversity and a Strong Geographical Cluster.
Amogne W; Bontell I; Grossmann S; Aderaye G; Lindquist L; Sönnerborg A; Neogi U
AIDS Res Hum Retroviruses; 2016 May; 32(5):471-4. PubMed ID: 26881451
[TBL] [Abstract][Full Text] [Related]
9. Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA.
Boltz VF; Rausch J; Shao W; Hattori J; Luke B; Maldarelli F; Mellors JW; Kearney MF; Coffin JM
Retrovirology; 2016 Dec; 13(1):87. PubMed ID: 27998286
[TBL] [Abstract][Full Text] [Related]
10. From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing.
Cornelissen M; Gall A; Vink M; Zorgdrager F; Binter Š; Edwards S; Jurriaans S; Bakker M; Ong SH; Gras L; van Sighem A; Bezemer D; de Wolf F; Reiss P; Kellam P; Berkhout B; Fraser C; van der Kuyl AC;
Virus Res; 2017 Jul; 239():10-16. PubMed ID: 27497916
[TBL] [Abstract][Full Text] [Related]
11. IVA: accurate de novo assembly of RNA virus genomes.
Hunt M; Gall A; Ong SH; Brener J; Ferns B; Goulder P; Nastouli E; Keane JA; Kellam P; Otto TD
Bioinformatics; 2015 Jul; 31(14):2374-6. PubMed ID: 25725497
[TBL] [Abstract][Full Text] [Related]
12. [Application of Next-generation Sequencing Techniques in the Dynamics of HIV-1 Quasispecies].
Zhang J; Xing H
Bing Du Xue Bao; 2015 Sep; 31(5):573-8. PubMed ID: 26738298
[TBL] [Abstract][Full Text] [Related]
13. Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden.
Neogi U; Siddik AB; Kalaghatgi P; Gisslén M; Bratt G; Marrone G; Sönnerborg A
Sci Rep; 2017 Jul; 7(1):6371. PubMed ID: 28744024
[TBL] [Abstract][Full Text] [Related]
14. Benchmarking and Assessment of Eight
Gupta AK; Kumar M
OMICS; 2022 Jul; 26(7):372-381. PubMed ID: 35759429
[TBL] [Abstract][Full Text] [Related]
15. Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes.
Rousseau CM; Birditt BA; McKay AR; Stoddard JN; Lee TC; McLaughlin S; Moore SW; Shindo N; Learn GH; Korber BT; Brander C; Goulder PJ; Kiepiela P; Walker BD; Mullins JI
J Virol Methods; 2006 Sep; 136(1-2):118-25. PubMed ID: 16701907
[TBL] [Abstract][Full Text] [Related]
16. A robust and cost-effective approach to sequence and analyze complete genomes of small RNA viruses.
Dimitrov KM; Sharma P; Volkening JD; Goraichuk IV; Wajid A; Rehmani SF; Basharat A; Shittu I; Joannis TM; Miller PJ; Afonso CL
Virol J; 2017 Apr; 14(1):72. PubMed ID: 28388925
[TBL] [Abstract][Full Text] [Related]
17. Evidence of a novel B/C recombinant exhibiting unique breakpoints of near full-length HIV type 1 genome from Northeastern India.
Lakhashe S; Tripathy S; Paranjape R; Bhattacharya J
AIDS Res Hum Retroviruses; 2008 Feb; 24(2):229-34. PubMed ID: 18284322
[TBL] [Abstract][Full Text] [Related]
18. Identification of new CRF43_02G and CRF25_cpx in Saudi Arabia based on full genome sequence analysis of six HIV type 1 isolates.
Yamaguchi J; Badreddine S; Swanson P; Bodelle P; Devare SG; Brennan CA
AIDS Res Hum Retroviruses; 2008 Oct; 24(10):1327-35. PubMed ID: 18844465
[TBL] [Abstract][Full Text] [Related]
19. Development of a Versatile, Near Full Genome Amplification and Sequencing Approach for a Broad Variety of HIV-1 Group M Variants.
Banin AN; Tuen M; Bimela JS; Tongo M; Zappile P; Khodadadi-Jamayran A; Nanfack AJ; Meli J; Wang X; Mbanya D; Ngogang J; Heguy A; Nyambi PN; Fokunang C; Duerr R
Viruses; 2019 Apr; 11(4):. PubMed ID: 30939815
[TBL] [Abstract][Full Text] [Related]
20. Characterization of HIV-1 CRF90_BF1 and putative novel CRFs_BF1 in Central West, North and Northeast Brazilian regions.
Reis MNDG; Bello G; Guimarães ML; Stefani MMA
PLoS One; 2017; 12(6):e0178578. PubMed ID: 28628667
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]