150 related articles for article (PubMed ID: 27454113)
1. RefSelect: a reference sequence selection algorithm for planted (l, d) motif search.
Yu Q; Huo H; Zhao R; Feng D; Vitter JS; Huan J
BMC Bioinformatics; 2016 Jul; 17 Suppl 9(Suppl 9):266. PubMed ID: 27454113
[TBL] [Abstract][Full Text] [Related]
2. Efficient sequential and parallel algorithms for planted motif search.
Nicolae M; Rajasekaran S
BMC Bioinformatics; 2014 Jan; 15():34. PubMed ID: 24479443
[TBL] [Abstract][Full Text] [Related]
3. PairMotif: A new pattern-driven algorithm for planted (l, d) DNA motif search.
Yu Q; Huo H; Zhang Y; Guo H
PLoS One; 2012; 7(10):e48442. PubMed ID: 23119020
[TBL] [Abstract][Full Text] [Related]
4. An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets.
Yu Q; Huo H; Vitter JS; Huan J; Nekrich Y
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(2):384-97. PubMed ID: 26357225
[TBL] [Abstract][Full Text] [Related]
5. Efficient sequential and parallel algorithms for finding edit distance based motifs.
Pal S; Xiao P; Rajasekaran S
BMC Genomics; 2016 Aug; 17 Suppl 4(Suppl 4):465. PubMed ID: 27557423
[TBL] [Abstract][Full Text] [Related]
6. qPMS7: a fast algorithm for finding (ℓ, d)-motifs in DNA and protein sequences.
Dinh H; Rajasekaran S; Davila J
PLoS One; 2012; 7(7):e41425. PubMed ID: 22848493
[TBL] [Abstract][Full Text] [Related]
7. SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets.
Yu Q; Wei D; Huo H
BMC Bioinformatics; 2018 Jun; 19(1):228. PubMed ID: 29914360
[TBL] [Abstract][Full Text] [Related]
8. A hybrid method for the exact planted (l, d) motif finding problem and its parallelization.
Abbas MM; Abouelhoda M; Bahig HM
BMC Bioinformatics; 2012; 13 Suppl 17(Suppl 17):S10. PubMed ID: 23281969
[TBL] [Abstract][Full Text] [Related]
9. An efficient exact algorithm for planted motif search on large DNA sequence datasets.
Yu Q; Hu Y; Hu X; Lan J; Guo Y
IEEE/ACM Trans Comput Biol Bioinform; 2024 May; PP():. PubMed ID: 38801693
[TBL] [Abstract][Full Text] [Related]
10. PMS5: an efficient exact algorithm for the (ℓ, d)-motif finding problem.
Dinh H; Rajasekaran S; Kundeti VK
BMC Bioinformatics; 2011 Oct; 12():410. PubMed ID: 22024209
[TBL] [Abstract][Full Text] [Related]
11. Improved Exact Enumerative Algorithms for the Planted (l, d)-Motif Search Problem.
Tanaka S
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(2):361-74. PubMed ID: 26355783
[TBL] [Abstract][Full Text] [Related]
12. Efficient algorithms for biological stems search.
Mi T; Rajasekaran S
BMC Bioinformatics; 2013 May; 14():161. PubMed ID: 23679045
[TBL] [Abstract][Full Text] [Related]
13. A speedup technique for (l, d)-motif finding algorithms.
Rajasekaran S; Dinh H
BMC Res Notes; 2011 Mar; 4():54. PubMed ID: 21385438
[TBL] [Abstract][Full Text] [Related]
14. ET-Motif: Solving the Exact (l, d)-Planted Motif Problem Using Error Tree Structure.
Al-Okaily A; Huang CH
J Comput Biol; 2016 Jul; 23(7):615-23. PubMed ID: 27152692
[TBL] [Abstract][Full Text] [Related]
15. Efficient motif finding algorithms for large-alphabet inputs.
Kuksa PP; Pavlovic V
BMC Bioinformatics; 2010 Oct; 11 Suppl 8(Suppl 8):S1. PubMed ID: 21034426
[TBL] [Abstract][Full Text] [Related]
16. Fast and practical algorithms for planted (l, d) motif search.
Davila J; Balla S; Rajasekaran S
IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(4):544-52. PubMed ID: 17975266
[TBL] [Abstract][Full Text] [Related]
17. PairMotif+: a fast and effective algorithm for de novo motif discovery in DNA sequences.
Yu Q; Huo H; Zhang Y; Guo H; Guo H
Int J Biol Sci; 2013; 9(4):412-24. PubMed ID: 23678291
[TBL] [Abstract][Full Text] [Related]
18. Voting algorithms for the motif finding problem.
Liu X; Ma B; Wang L
Comput Syst Bioinformatics Conf; 2008; 7():37-47. PubMed ID: 19642267
[TBL] [Abstract][Full Text] [Related]
19. A correlated motif approach for finding short linear motifs from protein interaction networks.
Tan SH; Hugo W; Sung WK; Ng SK
BMC Bioinformatics; 2006 Nov; 7():502. PubMed ID: 17107624
[TBL] [Abstract][Full Text] [Related]
20. Fast exact algorithms for the closest string and substring problems with application to the planted (L, d)-motif model.
Chen ZZ; Wang L
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(5):1400-10. PubMed ID: 21282867
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
